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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25052_g1_i1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		splicing_factor_3B_subunit_1_[Bombyx_mori]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0001825 P blastocyst formation
GO:0003682 F chromatin binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009952 P anterior/posterior pattern specification
GO:0016363 C nuclear matrix
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:16.49 TPM:8.58
ORF EntryO_BomoMSG15115_complete:A_BomoMSG_c25052_g1_i1
Sequence
(Nucleotide)
TATGAGAAATGGAGTTCATTTTCCATAGGTTAGGAAGAGGTAGTATGTAACTACCTATGC
ATAAAATCGGACATAGTCTGTGTTTACGAAAAAAACTCACGCTACCTATCTAATAAATCA
TCGATAGAAGAGAAAATAATTTGATTTCATTGTCCGTAAAGTTGCATAAATGTCTACAAT
CTTCTAAAAATGGATAAAATACCAAGAACTCATGAAGCCATTGAAGCACAAATAAAAGAA
ATACAATCAAAAAAAACTGAAGCACCAGAAAATGGTTCCAACAAAGGCGTGTCTCTCGGC
GAGACTTACTATGACAGCGATATATATGATAGCACAGGCCAAGGAGGCAAGTCCAGATAT
GACGGATATGTGACATCAATTGCTGCTAATGACGAAGTAGAAGATGATGACCTCGAAAAT
GTTCCTATAACTCAGAAAAGGCCAGGATATACAGCACCTGCTTCACTGTTGAATGACATT
GCACAAAGTGATAAAGAATTCGATCCTTTTGCTGACAAACGAAGACCAACTATCGCTGAT
AGAGAGGATGAATATCGACAAAAGAGGCGCAGGATGATTATATCACCTGAAAGAAATGAT
CCTTTTGCAGAAGGTGGGAAAACTCCTGATGTCGGATCGAGGACATACACTGATATAATG
AAAGAGCAGTATCTTCTTGCTGAAGAAACAGAACTCAGAAAGAAACTGTTAGAGAAAGCT
AGGGAAGGAACTCTCAAACCAGTACCACAATCTAATGGAGAATCCATAAAACCAGCAGCA
AAACGCAAAGGTAGATGGGATCAAAGTTCTGAAGAAACACCAGTTGTTAAGAAAACAGTA
TCAACTACACCAAGCTCACAGACAACTCCGTCTTGGGATGCTGAGAGAGGCACATGGGAA
GAAACTCCGGGAGCAGGTCGGGGCGGCGAGACGCCCGGTGCCACGCCATCGGCACGTGTT
TGGGATGCCACACCAGGACATATCACTCCTGGACACGCCACTCCGGGGCGCGAAACTCCG
GCTCATCACGCTTCTCGCAGAAATCGCTGGGATGAAACACCAAAAACAGATAGAGAAACA
CCAGGACACAACAGCGGTTGGGCTGAGACACCACGAACAGATCGCGGGTCAGGCGTGGAT
ACAATACAGGAGACCCCCACCCCTGGCACAAAGCGGCGCTCGCGTTGGGACGAAACCCCC
GGTGCCACGCCCGCACCCGCCACCCCCACGCCTTCTCACGCCACGCCTTCCCATGCCACA
CCCTCGCACGCCACGCCATCGCTCTCTACACCGACGCCGCACACGCCTGTCTTCACGCCA
GGAGGGTCTACACCTGTGGGAGTGAAAGCCATGGCACTGGCTACACCAACACCTGGTCAT
GTTGCAGCCATGACTCCAGAACAGTTACAAGCTTATCGTTGGGAGAAAGAAATAGACGAG
CGTAATAGACCTTACACTGATGAAGAACTGGATGCCATGTTCCCTCCTGGGTACAAGGTT
TTACCACCGCCTGCCGGGTACGTCCCGATTCGGACGCCGGCCCGCAAGCTGACGGCGACG
CCCACGCCGTTGGGTGGTACTCCAATCGGGTTTTTCATGCAGACGGAGGAGCCGGGCGGC
TCGGCCGCGGCGGCCGCGCGTCTTCTCGACCCTCAGCCCAAGGGTAACCAGCAGCTGCCC
TTTATGAAGCCCGAGGACGCCCAGTACTTCGACAAACTTCTCATCGACGTCGACGAGGAT
ACACTCTCTCCCGACGAACTTAAGGAACGGAAAATAATGAAGCTTCTTTTGAAAATAAAG
AACGGTACGCCACCCATGTGCAAAGCTGCCTTACGACAAATAACAGATAAAGCTCGCGAA
TTCGGTGCTGGACCACTTTTCAATCAAATTCTGCCATTACTGATGAGTCCTACGCTGGAA
GATCAAGAGAGACATCTACTGGTCAAAGTCATAGACAGGATTTTGTATAAATTAGACGAC
TTGGTTCGACCCTACGTACATAAGATTCTTGTCGTCATTGAACCTCTGCTTATTGATGAA
GATTATTATGCGCGTGTCGAAGGTCGCGAGATCATTTCAAATTTAGCTAAAGCAGCCGGC
TTGGCTACTATGATTTCTACAATGAGGCCTGATATAGACAACATAGATGAGTATGTACGA
AACACAACCGCTCGAGCGTTTGCGGTAGTGGCATCGGCCTTGGGTATTCCATCTTTATTG
CCATTTTTAAAAGCTGTGTGCAGATCTAAGAAATCCTGGCAAGCACGTCACACAGGAATA
AAGATTGTGCAACAAATTGCTATTCTGATGGGCTGTGCTATTCTGCCACATTTGAAATCT
CTTGTTGAAATTATTGAACATGGTCTGGTGGACGAACAACAGAAGGTCCGAACGATCACG
GCGCTGGCGAGCGCGGCTCTGGCCGAGGCCGCCACGCCCTACGGTATCGAGTCCTTCGAT
TCCGTGCTCAAACCTCTGTGGAAAGGTATTCGTACGCATCGTGGTAAAGGTCTGGCTGCA
TTCCTGAAAGCCATCGGATACCTCATCCCTCTCATGGATGCAGAATACGCGAATTACTAC
ACACGAGAAGTGATGCTAATTCTTATTCGTGAGTTCCAGTCGCCCGATGAAGAAATGAAA
AAAATCGTCTTAAAAGTAGTAAAACAATGTTGCGGTACCGACGGTGTTGAGCCTCAATAC
ATAATGGATGAAATATTGCCTCATTTCTTTAAACACTTCTGGAACCATCGTATGGCCCTC
GACAGACGAAACTATCGCCAGCTTGTCGACACCACAGTGGAAATTGCAAACAAGGTCGGT
GCATCAGAAATTATCAACAGAATTGTTGATGATCTAAAAGACGACAATGAGCAGTATAGA
AAAATGGTGATGGAGTCCATTGAAAAGATTCTCGCTAATTTAGGAGCAGCAGACATTGAT
TCTAAGCTCGAAGAAGCTCTTATCGATGGAATATTGTATGCATTCCAAGAACAGACAACT
GAGGATGTTGTGATGCTGAACGGTTTTGGAACAATCGTGAATCAATTGGGAAAACGCGTA
AAGCCCTATTTACCACAGATATGTGGTATTATTCTTTGGCGTATGAACAACAAGTCTGCT
AAAGTTCGGCAACAAGCTGCCGATCTCATTTCTCGGATCGCTGTCGTGATGAAAACTTGT
CAGGAGGAAAAGTTAATGGGGCATCTTGGTGTTGTACTGTATGAGTACTTGGGAGAGGAA
TATCCTGAAGTGCTAGGCTCTATACTTGGTGCATTAAAAGCAATTGTCAATGTTATTGGA
ATGACAAAGATGACCCCACCAATAAAGGATCTCCTGCCTAGGCTTACACCCATTTTGAAA
AACAGGCATGAAAAAGTACAAGAGAATTGTATTGATTTAGTGGGTCGTATTGCAGACAGA
GGACCGGAATTTGTGTCGGCCAGAGAATGGATGAGAATATGTTTTGAATTGCTTGAACTA
TTAAAGGCTCATAAGAAGGCAATTAGACGAGCGACTGTAAATACCTTTGGTTATATTGCT
AAAGCCATCGGTCCTCATGACGTACTCGCAACCTTACTTAACAATCTGAAAGTGCAAGAG
AGACAGAACAGAGTGTGCACAACGGTCGCTATTGCTATAGTTGCAGAGACCTGTTCACCT
TTCACAGTGCTACCTGCTTTAATGAATGAATACAGAGTACCGGAATTAAATGTTCAAAAC
GGTGTGCTCAAATCACTATCTTTCCTTTTCGAGTACATTGGAGAAATGGGCAAGGATTAC
ATTTATGCAGTTTGCCCATTATTGGAAGACGCGCTTATGGATCGAGATTTAGTACACAGA
CAAACGGCTTGCGCTGCCATAAAACATATGTCGCTCGGCGTGTATGGTTTCGGCTGTGAA
GATGCCTTAGTACATCTATTAAATCATGTTTGGCCAAATATTTTTGAGACATCACCGCAT
CTGGTGCAAGCCTTCATGGACGCTGTTGAGGGCATGCGAGTTGCCCTAGGTCCCATTAAA
ATACTTCAATATGCATTACAGGGCCTGTTCCATCCAGCGAGGAAAGTACGCGACGTTTAT
TGGAAAATTTACAATACGCTTTACATCGGAGGACAGGACGCACTTGTTGCAGGATATCCC
AGAATA
(4146 bp)

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