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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25031_g1_i2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_SYF1_[Bombyx_mori]
Ontology
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
Transcript
Level		FPKM:6.60 TPM:3.43
ORF EntryO_BomoMSG15061_internal:A_BomoMSG_c25031_g1_i2
Sequence
(Nucleotide)
TTTAAACTTTGGTATAACTATCTTAAATTAAGAAGAAAACAAATAAGAGGTCGCTGTATA
GCTGACCCATGCTATGAAGATGTAAACAATTGCTTTGAAAGGTCTTTAGTATTTATGCAC
AAAATGCCTAGAATATGGATGGATTACTGTTCATTCTTAACAGATCAGTATAAAATAACT
ACAACAAGGAAAGCGTTTGACAGTGCTCTTAGAGCTTTACCAATAACTCAACATCATAGG
ATATGGCCTCTTTACTTAAATTTCTTGAAGAAACACAATATACCCGAAACAGCTGTAAGA
GTGTTTCGTAGGTATCTTAAATTATGTCCTGAAGATACTGAAGAGTATATTGACTACTTA
ACTTCAATAGATAAATTAGATGAAGCTGCAGTCAAATTGGCTCAACTAGTTAATAATGAG
AATTTTCAATCAAAACATGGAAAGTCAAATCATCAACTTTGGAATGAATTATGTGAATTG
ATATCAAAGAATCCTGATCAAATTCATTCTCTGAATGTCGACGCTATTATCAGAGGGGGA
TTAAGACGTTACACTGATCAGCTAGGCCACCTGTGGAACTCTCTTGCAGACTATTATGTT
CGAAGTGGTCTTTTTGAAAGAGCCAGAGACATTTATGAAGAAGCTATACAAACTGTGACT
ACAGTGAGGGATTTTACACAAATATTTGATGCTTATGCACAATTTGAGGAATTAAGTCTT
AGTAAAAAAATGGAAGAAGTTGCCAAGAAAACTAATCCAAGTGAAGATGATGATATTGAT
TTAGAATTGAGACTTGCCAGATTTGAGTATCTTATGGAAAGAAGGCTGTTACTGCTTAAT
TCAGTTCTACTTAGACAAAATCCACATAATGTGGCTGAATGGCATAAAAGAGTCAAATTA
TATGAAGGTAAACCCCATGAAATAATAGATACATATACTGAAGCAGTGCAAACTGTAG
(958 bp)

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