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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25016_g1_i2
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		squamous_cell_carcinoma_antigen_recognized_by_T-cells_3_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:14.20 TPM:7.39
ORF EntryO_BomoMSG15018_5prime_partial:A_BomoMSG_c25016_g1_i2
Sequence
(Nucleotide)
ATCGCCATTATTCGTTCGTTTGTGAATTTAACAAATACAAAACTACACAGTTATTGATTA
CTCTCGTGTGATAAACAATGGCGATAGTAGAAGACGAAATTCAGAACGGTTCTGAAGGGG
AAAATGAAATTGAAGTTGTGGTTGAAGAAGATGATGGCGACCAGGATCCAGATTCTGATG
ATGAAATATTGGAGATGGGAGATTGGCAGAGGAAAGTGGCCGAATATGAACACAAAATCA
CATTACATCCTTTTAATTATGATGATCACATTGAATTGATCCAGACTTTGTGGCGTCTAT
CGGAACTGGGGCAATGGCGAACGGCGTTTGAAAGATTATGGGAGATGTCAGTTATAAAAG
TTGATCATTGGCTCTTGTGGCTCCGAACAGAAGAGAATATTTCACAGTCTGAAGAACTAA
TTGCCAATTTATTCTATAAGGCAACCTGTGATTGCTACTCTATGTCTATACTGTCAAGAT
GGAGTTCGTGGGCCCTTTCATTAGATGAAATACCTAAAATTCGAGCGCAACTTGACGAAG
TTTTGCGTCGTGGAGGCTCCGATCCGTATTCAGGAAAAGTGTTGTGGGATCTAAAAATTG
ACTTTGAAAAATCACAATTAAATGAGACATGCAAAGAAGATTCGGGTTATAAAGAACAAG
AAGACCGTGTGTTGAGGTGTTTAGAGGTAGTGGCATCGCTTCCTATAAGCAGAAATCAGG
AGGCATGGGATCTATTTGAAGATTTTGCTAAAGATATCCGTGAACAGGAGTACATAGAGA
AGGTGGAACAGCAACATAAGGCAGCTGTGGATTACTTAAAGAAAATTATGCCATATGAAA
TCAGAACAAAGACCACTCAATGTTATATGGCCAATTACAAGGTATACCTTGAGTATATTG
ATCTTGTGAAGCAGTTGTCTGTAGAAGAGAAGTATGCTGAATGTGATAGCGACGGTCTGC
TCAGGCTCCTGTACGACCGGGCGACGTACGAATGTCTGCTCAATCCGGCCGTGTTCGAGT
TGCTGGTCGAGTTCGCGAAGCACACCCAGGTGACGTCATCACGCGCGACGTACTGGCGCG
TCCTCGAGCTGTGCACGCGGCGCTGTCCGCAGAAGCACACCTTTTGGACCCTCAAGATGC
AGCAGGCTGAACACGAGGAGAAAGACTTCGACGAGGTGAAGTCGATCTTCGAGACTGCCT
TATCGAAAGGTCTGGAATCTTACAAGGAGGCTGAAATGCTATGGCTGAACTATCTCGAGT
ACGTGCGCCGCAACACGAAGTTCAGTGACGACGATCAGATTGAGCGGTTGAGGCGCACAT
TCAGGCTGGCCTGGGACTCGCTTGCTGAGGCATGGGGCGATGAAGCGAATGATTGTGAGA
TACCATTGTATTGGGCAAGAATTGAATACAAATTCTTGAATTCACCAAAACGAGGGAAAG
AGATCTTTGAAGAATTATTCAAATATGGCTTCAATAAAACCATGTCCAAGTATTGGGAAG
CTTTGATACAATTAGAAAGTAGCCGGTCTCCTCCGCTGTCCGAGTTCAAGTTCCGGGATC
TGCTGAGACGCGCGTTGAGGTCGGTCACCGACTACCCCCCGGCCATAGCGCGCCTCTGGA
CTGATTACGAACGAGACTACGGGAAGCTGGACACCAGTAAGGAGTGTCAAGAAACTTGTG
AGTTAAAAATACGGGAGTGGAGGAAGAATTATCAAGCCTTGAAGGAAAATATGACAAACA
AAAACGATACTGATAAAACAAATGATAATAAGAAAGGAAAATCAGCCAACAAAAACAAAA
AACTCGAAAACAAACAGAAAGGTAAAAGGAAATTGAATGGCGGTAGTGATGAAGCTAGTG
ACGTAAAGAGAAAAAGAGACGGAGATCAAGAATTGCCCGTGAAAGAAAAGGACGGAGGTA
GCTCTGGAGTCAAGCGGGCACATACTGAAGAAGAGACTGAATTAACTGAGAATAAAAAAC
AGCGCGTAGAGGCGGCCGGTACAGCGCAGTCTGCGAGCACAGAGGCCTGCACATTGTTCG
TCAGTAATCTAGACTTTAAAGTCGATGAAGATAAATTACGACAGGAATTATCGAAGTACG
GTGACATCGTCGAAATGCGGCTCAGATCAGGAGTGAAATCGTTCGGCGGCTCTATTTGCT
ACTGTCAATACAAGACAGCGGACTCAGTGGAGGAGGCTCTGAAGCACGATCGAACTCCTT
TAGACGGCAGACCGATGTTCTTGTCTCGATACTCGGCCGATAAATCTAAGGCGACCTTCA
AATACGCTACCACGATGGAGAAGAACAAGTTGTTCGTGACGGGCCTGCCTTACTCGCGCT
GCAATAAGGAGTGTTTGACCGAAATATTCGAGAAGTACGGCAAACTGAAAGACATCCGGG
TGGTCACTTTCAAAGACGGGAAACCGAAAGGTTTGGCGTACGTCGATTACGAGGACGAAG
ATTCCGCGGCCAGAGCCATAGCGGCGACGAACGGCACGACGGTGGGGGACAGGAAAATAG
AGGTCGCGATCAGCCAGCCCCCGCCCCGCGCCGCCCGCCCGACCCCC
(2567 bp)

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