SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24829_g2_i3
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_3_isoform_X3_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:2000036 P regulation of stem cell population maintenance
Transcript
Level		FPKM:3.89 TPM:2.02
ORF EntryO_BomoMSG14502_5prime_partial:A_BomoMSG_c24829_g2_i3
Sequence
(Nucleotide)
GATCTCACGCAGCAACCGCCCCCAACGTCGCGGAGTACATCGTCGAGTGGCGGCGCCAGC
GCGAGCGTGACGACGTCCCCCCTCACCGTCAACGGCCCCCCTCCCTCCGCGCATCACACG
CCGCACCACGCGCTCAACAATGGACGAGTGAGCGAGACGTCGAGCATGTCGGCGGTGAGC
GCGTCGAGTGCCACGAGCGCGAGCAGTGCGGCGCACAACACCGCCTCGCTCAAGAGCATG
GCGCAGGAGGCCGTGCACCGCGCCGGTCTGGACCTGCACCACCAGAACACGAGACGGAGT
ACGGCAATAGCGCAAGCGCACATTCCGCCACTATTAGGAGTCGCGCCCTTAGGACCGCAG
CCACTTGACTCGGGCCATCAAGTACAGTTCCAGATGATGGAGTCAGCGTTCTATCACATG
CCCCACCCTTCAGACTCGGAACGTACAAGGGTCTACTTGCCTAGGAACATTTGTCGGACT
CCTGAATATTACAATCAGGTGTTATTACCCCATTCGGACACGGTAGAGTTCTTCCAGCGG
TTGTCGACGGAGACGTTGTTCTTCGTGTTCTACTACATGGAGGGAACGAAAGCGCAGTAC
CTCGCAGCGAAAGCGCTCAAAAAACAAAGCTGGCGCTTCCATACTAAATACATGATGTGG
TTCCAGAGGCACGAGGAACCAAAAGTCATCAACGAGGAATATGAACAGGGCACATACATC
TATTTCGACTACGAGAAGTGGGGCCAGCGCAAAAAGGAGGGCTTCACGTTCGAGTACAAG
TACTTAGAGGACCGAGACTTGAATTGAACCTGCGTCACCGAACCGCCGTCCGCACTCGCG
TCTACTACACACCACCTGCGCGCAGACCACTCGATAACTATACACGACATTCCTATATTT
AGGAAATTTTTAGTTGTAATTACCAAAAAATACTTATGATAAAACAACTCGCACCGTTTT
TTCTGTATGTGCATACGGGAAGCCAGCCGTGTCATTCGAAATTGAGCACGCACCGGAATG
CTCACAGGTTGGAACTCGTGTGTACGTGACGTGTTCACGAGCGCTCACGTTTGTCAGACC
GCGGTTCCGCCGTTTGTCAACGTAAGCTAATAATAAAAAACATGTACCTGAAATAAATTT
CATGGACTGGTATTTATATAGAGACAATGTTATGACGATGGTTTTACGGGAAAGATGTTT
TAATGAACGTCGCATCGAGACGATGGAAACGGATCGCGATGTCAACGCGAGGGAACCTGA
AGTTACTACTACATTATGATCCACGATAATAGCGTCGACCGGGACTAGTGATGCTATCGA
TAGTTTTATATCGATGTAATACTTAAACGGCTCGATTCTATTATCGATTTAAATGTTCGG
ACACGAGATTTTTTTTGTTAATCATGAAGAAATCTTTTGTATAAACAGCTTTCTGGCAGT
CAGTGATGTAGTGTTGTTGTTGTTTTTTTTTTTAAATAATTGAACAAAAAAGCGAAAGAT
ATCATGTGATGCAGTATATTTAGTCAGCCGTGCGCGGTCGTTAAGAACTAATGTGATATT
GTTATAAGCTCGGAACATTCTTGGACTACTGTTAGATAAATTGTGAATGTGTGAAAGGCG
TTGCGTGCGTAGCTATAAGAGGTTCGATGTTGACAATTTAATAGTTTAGAATGTTGTAAT
TGCCTAGTCTGAATTCCGATA
(1701 bp)

- SilkBase 1999-2023 -