SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24781_g1_i3
Scaffold_idBomo_Chr20
NCBI non-redundant
(nr)		vacuolar_protein_sorting-associated_protein_35_isoform_X1_[Bombyx_mori]
Ontology
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006624 P vacuolar protein processing
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030904 C retromer complex
GO:0031647 P regulation of protein stability
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045056 P transcytosis
GO:0061357 P positive regulation of Wnt protein secretion
GO:0070062 C extracellular exosome
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0097422 C tubular endosome
GO:0097481 C postsynaptic density
GO:1902823 P negative regulation of late endosome to lysosome transport
GO:1990126 P endocytic recycling
Transcript
Level		FPKM:14.27 TPM:7.42
ORF EntryO_BomoMSG14409_complete:A_BomoMSG_c24781_g1_i3
Sequence
(Nucleotide)
GATCTGCTCATTGACTGATTGTTAACGCCTACGAATTTTCGTCGAATTTGCAAAAAAACC
TTATCTGGTTTTTCAATTGCATCGGATTAGTTACTCAGGCCCAAATGACAAACCAGGTGT
CTCCAGTCGAAGAGCAGGAGAAACTCCTGGAGGAGGCCTTGAACATTGTTAAAGTTCAGG
CATTTCAAATGAAAAGATGTCTCGACAAATCTAAATTAATGGACGCCCTGAAACATGCAT
CAACAATGCTGGGTGAATTGAGAACTTCACTGTTATCACCAAAGAGCTATTATGAGCTTT
ATATGGCAATAACAGATGAACTGCGTCACCTGGAGCTGTATCTTCTGGAGGAGTTCCAAA
AGGGAAGGAAGGTTGCAGATCTTTATGAACTGGTCCAATATGCTGGGAACATTGTACCTA
GATTGTACCTGTTAATCACAGTAGGACTGGTCTACATCAAAACAAACACGAATCTGCGAA
GAGATCTATTGAAGGATCTGGTTGAGATGTGTCGCGGAGTTCAGCATCCTTTGAGAGGAC
TTTTCCTTAGGAATTACCTATTGCAGTGCACAAGGAACGTTTTACCGGACACACACGAAG
CCCCAAATGAAAACGAGGGAACTGTACGAGATGCTGTTGATTTTGTCCTGATGAATTTCG
CCGAAATGAACAAGCTGTGGGTCAGGATGCAGCACCAGGGACACTCAAGAGATAAAGAGC
GCCGCGAACGAGAACGCTCAGAGCTTCGTATATTAGTTGGTACGAATTTGGTTCGACTGT
CGCAACTGGAGTCCGTCACGGTGGAGGACTACCGCAGGATGGTGCTGCCCGGCATCTTGG
AGCAGGTCGTGAGCTGCAGGGACGCCATAGCGCAGGAGTACCTCATGGAGTGTATCATAC
AGGTGTTCCCGGACGAGTTCCACCTGGCCAACTTACAGCCGTTCCTCAAGTCGTGTGCTG
AACTCCAACCCGGAGTCAACATCAAGAACATCATCATAGCACTGATCGAGAGGCTCGCTT
CGTATAGCCAGAGGAATGAAGGCAATATGAATCTAAGCGTGGTCCTGGAAGATGGACAAG
AACAAGAAGTCCAACTGTTCGAAGTTTTCTCTGATCAAGTTGCTGCGATAACCCAGAGCA
GGGTCGACATGCCCCAAGAAGACATGCTGAGCCTCCAACTCGCTCTGCTCAAGCTAGCTC
AGCGATGTCACCCGGACAAGCTGAACTATGTGGACCGGGTTCTAGCTCACACAGACAAGA
TCTGCACTGACATACACCAGTCCAGCGGTCAGTCGACGTTGGAGCACCACACGCCAGTCT
TCAAGGAACTGATGAAGATCATCAAGCTGCCCTGCGACCACTACAAGAACATACTGGTGC
TGATTAAGTTGTCCAATTACGCGCCGCTGATACGACATCTCAGCTACCAGGGTCGGGTGA
TGATAGCCGTCCACCTCATCAACGACGTGCTGGAGACCAACACCGCAATATCCACTCCGC
AAGATGTCGAAGCTGTCCTCGGTCTCTTGGATGTGCTGGTGAAGGATCAGCCGGATCAGC
CGCCTTCTGAAAGCGACGTTGAAGACTTCGTGGAAGAACAGGGCTTGTTGGCCAGACTTA
TTCATCATTTCAAATCGGACTCCGCCGACCAGCAGTATCTGATAACCAGCACAGCGAGGA
AGATCCTTCAGGGCGGCGGAGCGAGGAGGATCCAGCACACGTTCCCGCCGTTGGTGTTCC
ACGCGTACCGTCTGGCGTTCGTTTATAAGGACCTCAAAGACCAGGACGAGATGTGGGAGA
AGAAATGCCAGAAGATATTCCAGTTCTGTCACCAGACCATCACCATGCTCGTGAAGGCGG
AACTGGCTGAACTCCCTCTAAGGTTGTACCTCCAGGGAGCTTTGGCGATAAGCGAAATAG
GATTTGCCAATCATGAAACGATAGCTTACGAGTTCCTGTCGCAAGCTTTCTCGCTGTATG
AAGACGAGATATCCGACAGCAAAGCGCAACTGGCCGCAATAACATTGATAATAGCCACCT
TCGAGCAGATCAATTGTTTTGGCGCTGAGAACGCGGAGCCGATGCGGACCCAGTGCGCGC
TGGCGGCCAGCAAGCTGCTGAAGAAGCCGGACCAGAGCAGGGCCGTGGCGCTCTGCTCGC
ATCTCTTCTGGAAGGGGACCAGGGACGGCCGCCCGGTGTGGGCGCTGAACGACGCGTCCC
GCGCGCTGGACTGCCTGAAGAAGGCGGCCCGCGTGGCCCAGCAGTGCATGGACGGCGGCG
TGCAGGCGCAGCTGCTGGCCGAGCTGCTGGGCCGATACGCGCTGCTGCGGGAGCGCGGCA
ACCAGAGTCTCACGCCCAGCCTCATCGACGCGATAATACAGAAAATACGCGAGGAGCTGG
CCAACTTAGATCAGTCCGAAGAAGTGGAGCAGATCACGAAACACTTCCACAACACTTTGC
AGCATCTGAAGAACAGGATCGAGTCTCCGGACCCCGAGAGTCTGGGCTACGAGGGTCTCA
CGCTGTCCTAACCCTGGGAGGTCCGGTACTTGTTCTTGTCAATCTATCGTAATGACGTAG
TTTGGAGTGTTAGCACTCGTGAACACACTATACTAGCGATATAGAGCGTCAAAGGCTCAC
GTGAGTACCCTTCAACTACTAGTATCTAATAAACATCATCAAGATGTATTAATGAAATGA
TAAAATAAATATAACATTTATATAGAGAAATGAAGAACAAATATATTA
(2748 bp)

- SilkBase 1999-2023 -