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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24656_g1_i3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
Ontology
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:11.38 TPM:5.92
ORF EntryO_BomoMSG14113_3prime_partial:A_BomoMSG_c24656_g1_i3
Sequence
(Nucleotide)
CGCAAACTAAATACATACAGTACTGTCAATTTAAAGTTATAATTCATTAAGATAAAGTAT
TTGCATTCTGAAATCTTGAACAGCTTTCCAATAATGTGGAAGGAGAGTTGTTTTATGTTT
TGAACAACAGTGATGACAGCTAAGAATAATTGAGTCACGATGGAGTTTAAATTAGTGCGA
ATTGATACTTCAGAGCCTCAAAAGATTGACCTTCCTGAGGGTACACACATAATAGGCAGA
GGAAAGTTTATTGTAAATGATGCAGAAGATATGAGGGTATCAAGAAATCATGCAGAGATT
GAAGTCACCGATACCTGTGTCATCTTAAAGTCTTTACACCAAAATCCATGTTTCTATATT
GACAAATTATCAAACAGCAAACGGACATTAACACAGAATAATGCACAATTGCTATGTAAT
GGTGATAAATTTGGTATACTACCTGATACATATTGGTTTGAATTAATATGGTGCTCATCA
GATGTGATGAAAAATGATGTTACAAGCAATAGTACTCCAGCTGATAATAAAGAAATACCC
AACGAGTTGAGAGCAACACAAGAATATAATTTAAATGAAACAAATGGCTTACAAGAGACA
GTTGAGGAGGGTGAAGCTCCACAAACATTAAAAGAACAATCACTAGAAAAACAATCAGAA
AGTCCTCAAAAATCATCTCAAGATGAAATTGTAGGTAAAAGATCTATCACTTCAGAAGAT
TGCAACAATAGTTCAGAAAGTAAGAGATTGAAAATTAAAAACGAAGAAGAATCTGGAGAT
GAGGCCAGAGGACATGAAGACTCTAGTGTGGCGGGACCGAGCTGTGATCAACATAAAGAG
GAACAAAATGATAATGGAGAAGTGAAGGATCAAAATACATCACAGAATAGTAACCATGAT
GGTGCCCAGGGAATTAAGTCTCCCAGAGAGAGGTGCATGTATGGTGCTAATTGTTACAGA
CGCAACCCCCAGCACGCGGCGCTGTACAGCCACCCGCGCGACGCGGACTGGACGCCGGCG
CCGCGCTGTCGCTACGGGGAGCGCTGCACGCGCCGCGACCCGCGCCACCGCCGCGACTAC
CTGCACCCCGCGCCCGCGCCCGCGCCCGCGGACCCACCAGGTATGCAATTAGTTCAGCGA
CACGGG
(1146 bp)

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