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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24460_g1_i2
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		superkiller_viralicidic_activity_2-like_2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:22.26 TPM:11.58
ORF EntryO_BomoMSG13698_complete:A_BomoMSG_c24460_g1_i2
Sequence
(Nucleotide)
GTGGAGTCTATTCAGTGAAAATAAAACAACAAAATCTGAAAGAGAATCAGAAATGTACTC
TAAAATCTAAACTGATAAATTGATAAATGGAATGTACTAAATCAATATTGAAAATCTGCA
AAGTTACCTGTTTAAAATGTCTGACATAAATAGTTTGTTTGACTGTTTTGATGAAACACC
AATAACTGAAGCTGCGATTCAGCTGCCAAATGTTAAAAATGTTGAAAAACCAAACTTGGA
AGAGTTGACTGCTGCTGGAAATAAGCGTGCACATGATGACATCCAGTACGCTGATACCTC
TGTATCAAAAAAGCCTCGCGAAGAAGAGGAAGACTCTGAATTGATTACCGACATAAATGT
TGATCTGCTCCAATCTCGTATAGTGATACACACGCTAGAAACTCACGAGGGCTGTACACA
TGAAGTGGCAATACCACCTAATCAGGAATATGCTCCTCTTTTACCACTGACAACTGAACC
TGTAAAGCAGTACAGTTTCATATTGGATCCGTTTCAAAAAGAAGCAATATTGTGTATAGA
TAATTTACAATCTGTACTTGTATCAGCTCACACGTCTGCTGGCAAAACAGTGGTTGCTGA
GTATGCCATAGCTCTATCACTAAAAAACAAGCAGAGAGTAATATACACAACCCCTATTAA
AGCTCTTTCGAATCAAAAATATAGAGAGTTCTCAGAGGAGTTTCATGATGTTGGTTTAAT
AACTGGTGATGTAACTATCAATCCCTCTGCTTCATGTCTTATCATGACAACTGAGATTCT
CAGGAACATGTTGTATAGAGGTTCAGAAATTATGAGAGAAGTTGGTTGGGTTGTGTTTGA
TGAGATTCATTACATGAGAGATAAGGAGAGAGGTGTCGTTTGGGAAGAAACACTCATCCT
TCTGCCGGACAATGTGCATTATGTATTTTTGTCTGCAACTATACCTAATGCACGTCAGTT
TGCCGAGTGGGTCTGTCGCTTGCATTCCCAGCCTTGTCACGTCATTTATACAGAATACAG
ACCCACTCCACTGCAACACTACATTTTCCCAGCCGGTGGTGATGGAATACATTTGGTTGT
TGATGAAAAGGGTATATTCAAGGAAGATAACTTCAACACAGCAATGACAGTGCTGAACAA
TGCAGGTGAAGCAGCAAAAGGCGACCAACGTGGTAGACGCGGCGGACCCCGGGATAAAAA
TCAGACCAATATTTTTAACATTGTCAAAATGATTATGGAAAGAAATTTCGCTCCCGTGAT
CATATTCAGCTTCAGTAAAAAGGATTGCGAACTATATGCCCTACAGATGGCGAAACTGGA
CTTCAACACAATTGAAGAAAAAAAACTAGTGGACGAAGTGTTTAGCAACGCAATGGATGT
TTTAAGTGAAGAGGATCGGAAATTACCACAAGTAGAGAACGTTATACCTTTGTTGAGGCG
CGGCATTGGCATACATCATGGAGGTCTACTGCCTATACTGAAGGAAACTATTGAAATATT
ATTCGGCTTAGGACTCATCAAGGCTTTATTTGCTACTGAAACATTTGCTATGGGATTGAA
CATGCCTGCGAGAACGGTAGTGTTTACCAACTGTCAAAAGTTTGACGGGAAGGAAGTTAG
ATTTATATCGTCAGGTGAATATATTCAGATGTCTGGTCGCGCTGGTCGGAGAGGTCTCGA
CGACAAGGGTATCGTTATATTGATGATCGACGAGAAGGTTACGCCCACTGTTGTCAAAGG
CATGGTGCAAGGGAAAGCTGACCCTATTAATTCTGCATTCCATCTCACTTATAATATGGT
TCTTAATCTACTGCGTGTAGAGGAAATCAATCCGGAATATATGCTGGAAAGAAGTTTCTT
CCAGTTTCAGAATCAAGCAGCCATACCGGATCTGATAGACAAGGTCAAAGCAAAACAGAA
ACAATACGACGCCCTGTCCGTTAACGAGGAGAACTCCGTAGCTTCATACTCCACCATCAG
AACTCAGCTAGATTTGCTCGGGGACCAGTTTCGGTCGTTCATAACTAAGCCGGAGTACTT
GAAGCCTTTTTTGCAACCGGGAAGACTTGTCAAGGTGAAAACAGAGAAATACGAATACGA
CTGGGGCATCATAGTGAACTTCAGACATAAATCGAACAAAGGCAAGAAAGGACAAGAAGA
GAATCCTTTGACGGCCGAGCCCGCCATTATTGTCGACATCCTACTGCACGTGAAGACGGC
GACCGGCGGCGACGGCGAGACCAACGTGCCGTGTCCGCCCGGCGAGTCTGGCGACGTACA
AGTGGTTCCAGTCGTACACACACTAATATACCAGATCAGTTCTCTTCGGGTGTACTATCC
TAAGGACTTGAGGCCTTCGGACAATCGGAAATCTGTATTGAAGACTATAGGCGAGGTGAA
AAAGAGGTTCCCCGATGGTCCCCCGCTGTTGAATCCCATTAATGATATGAAAATTAATGA
CTCAGTGTTTAAACAATGCGTCGATAGAATCAAGTTATTGGAAGAAAGACTATACTCACA
TCCGATCCATACAGACAAAAACAGAAGCGCCCTGACAGCTGCTTACGACAAGAAACAAGA
GTTATATGAAGAGCTACAGAACGCTAAAGCGGAACTGAAGAAGGCGAAGAGCATACTGCA
GATGGACGAGCTGAAGAAGAGAAAACGGGTGCTGAGGCGGCTCGGCTACTGCACCGCCGC
CGACGTCATCGAGATGAAGGGACGCATCGCCTGCGAGCTCAGCAGTGCGGACGAACTGCT
GCTAACGGAGTTGATATTCAACGGGGTGTTCAACGCGCTGTCTCCGGAGCAGAGCGCGGC
GTTGATCAGCTGCTTCGTTTGCGACGAGAACTCCACGCAGGCCAGCGTCTCCGGCGAGGA
GCTGCGCGGCGTGCTCAGGCAACTACAGGAATATGCCCGACGAATAGCAAAGGTATCGAT
CGATTCTAAAATGGATTTGGATGAAGATACTTACGTTAGTAAATTTAAATGTACACTCAT
GGACGTGGTCCTGTCATGGGCCAAAGGAGCTTCGTTCTTGCAGATATGCAAGATGACTGA
TGTTTTTGAAGGTTCAATAATAAGATGTATGAGACGTTTGGAGGAGGTGTTGCGACAGCT
GTGCCAGGCTGCCAAGAACATTGGCAACACCGACTTGGAGAATAAATTCAGTGACGCGAT
CAAAATGCTCAAGAGGGACATTGTGTTCGCAGCCAGTCTTTATATGTAGTTTTAAGAAGA
ACCGAAATTATACCAATATTGTTTTCGAAAAAAAAAAAAA
(3280 bp)

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