SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24460_g1_i1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		superkiller_viralicidic_activity_2-like_2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.89 TPM:2.03
ORF EntryO_BomoMSG13697_5prime_partial:A_BomoMSG_c24460_g1_i1
Sequence
(Nucleotide)
TGTGCTCTTCCGATCTTCAGAACTCAGCTAGATTTGCTCGGGGACCAGTTTCGGTCGTTC
ATAACTAAGCCGGAGTACTTGAAGCCTTTTTTGCAACCGGGAAGACTTGTCAAGGTGAAA
ACAGAGAAATACGAATACGACTGGGGCATCATAGTGAACTTCAGACATAAATCGAACAAA
GGCAAGAAAGGACAAGAAGAGAATCCTTTGACGGCCGAGCCCGCCATTATTGTCGACATC
CTACTGCACGTGAAGACGGCGACCGGCGGCGACGGCGAGACCAACGTGCCGTGTCCGCCC
GGCGAGTCTGGCGACGTACAAGTGGTTCCAGTCGTACACACACTAATATACCAGATCAGT
TCTCTTCGGGTGTACTATCCTAAGGACTTGAGGCCTTCGGACAATCGGAAATCTGTATTG
AAGACTATAGGCGAGGTGAAAAAGAGGTTCCCCGATGGTCCCCCGCTGTTGAATCCCATT
AATGATATGAAAATTAATGACTCAGTGTTTAAACAATGCGTCGATAGAATCAAGTTATTG
GAAGAAAGACTATACTCACATCCGATCCATACAGACAAAAACAGAAGCGCCCTGACAGCT
GCTTACGACAAGAAACAAGAGTTATATGAAGAGCTACAGAACGCTAAAGCGGAACTGAAG
AAGGCGAAGAGCATACTGCAGATGGACGAGCTGAAGAAGAGAAAACGGGTGCTGAGGCGG
CTCGGCTACTGCACCGCCGCCGACGTCATCGAGATGAAGGGACGCATCGCCTGCGAGCTC
AGCAGTGCGGACGAACTGCTGCTAACGGAGTTGATATTCAACGGGGTGTTCAACGCGCTG
TCTCCGGAGCAGAGCGCGGCGTTGATCAGCTGCTTCGTTTGCGACGAGAACTCCACGCAG
GCCAGCGTCTCCGGCGAGGAGCTGCGCGGCGTGCTCAGGCAACTACAGGAATATGCCCGA
CGAATAGCAAAGGTATCGATCGATTCTAAAATGGATTTGGATGAAGATACTTACGTTAGT
AAATTTAAATGTACACTCATGGACGTGGTCCTGTCATGGGCCAAAGGAGCTTCGTTCTTG
CAGATATGCAAGATGACTGATGTTTTTGAAGGTTCAATAATAAGATGTATGAGACGTTTG
GAGGAGGTGTTGCGACAGCTGTGCCAGGCTGCCAAGAACATTGGCAACACCGACTTGGAG
AATAAATTCAGTGACGCGATCAAAATGCTCAAGAGGGACATTGTGTTCGCAGCCAGTCTT
TATATGTAGTTTTAAGAAGAACCGAAATTATACCAATATTGTTTTCGAAAAAAAAAAAAA
(1320 bp)

- SilkBase 1999-2023 -