SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24416_g1_i2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		RNA_pseudouridylate_synthase_domain-containing_protein_2_isoform_X4_[Bombyx_mori]
Ontology
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0019239 F deaminase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0044822 F RNA binding
Transcript
Level		FPKM:5.42 TPM:2.82
ORF EntryO_BomoMSG13604_5prime_partial:A_BomoMSG_c24416_g1_i2
Sequence
(Nucleotide)
CGGGGGCATGCAGGCCGGGGGGGGCTGGTTCCTGCCATGGACAATGGGAATGCAGAAGTT
TGCGGTAGCGTTGCCAATGGGCGGCATGGTACCATTGGTGCCTCCGCTCTTGGCAGCGTT
ACCGCCCGCACCGCCCCCTCTTCGGCTTATAGCCCCACCGCAGATACAACATCAGGCGCA
ACCAGGCAGAAAGGGAGAAAAAGACAACGGCAAGAATATAATCTTATCTTGCGAGAAGAG
GAAAGCAGATGATAGCGAAATCAACAAAGACTTAAAAAAGGCTAAATTAGAAACGAAGGC
TTTAAAAGCAAAGAGGCCCGGCTTCACGGACGACAGATACAACGAGACATCATATTACAT
GGAAAACGGTCTTAGAAAAGTCTACCCGTACTATTTCACGTTCACGACCTTCACGAAAGG
GAGATGGGTCGGGGAGAAGATCCTGGATGTCTTCGCGAGAGAGTTCAGAGCGCACCCTGC
AGCGGAGTACGAAAGGTGCATCAGGGCCGGTACCCTCACGGTCAACTACGAGAGGGTTGA
CCCTGATTACAGACTCAAACACAACGACCTTCTAGCGAACGTAGTGCACAGGCACGAAGT
ACCGGTCACCAGCCAACCCATCACCCTCGTTCATATCGACGAGGACATTGTGGTTGTCAA
CAAACCGGCCTCTATCCCCGTGCATCCATGCGGTCGCTACAGACACAATACCGTTGTTTT
TATCCTCGCGAAGGAATACAACTTGAAGAACCTGAGGACCATCCACAGACTGGACAGGCT
CACGTCAGGACTTCTTCTGTTCGGGAGGAGTCCGAAGAAAGCTAGACAGATGGAGCACCA
GATTAGGAACCGACAAGTCCAGAAGGAATACGTCTGCAGGGTCGACGGAGAATTTCCTGA
CGAGGAAATAGAATGTCAAGAGCCGATAGAAGTGGTCAGCTACAAAATAGGCGTGTGCAA
GGTGTCTCCGAAAGGCAAGGACTGCTCGACTGTGTTCAAGCGACTTGGCTTCAACCAGGC
GAACAACACTAGCGTGGTGCTCTGCCGCCCGAAGACCGGTAGAATGCACCAGATCAGAGT
TCACCTGCAGTACCTTGGTTACCCGGTAGTAAACGATCCCCTGTACAACCACCCTGTGTT
CGGTCCACTGCGCGGTAAGGGCGGCGACACCGGCGGCAAAACTGACGAGCAACTAGTCCG
GGATCTGATCGCCATCCACAACGCCGAGAACTGGCTCGGTGTTGATGCTGCTGATGACGA
TTTGCTGTTCTCAAAGCCGGCGCCTGATGATAAAGTTGGCGAAGACGACTGCGACACAGG
ACCCGCTTCCAGGGAGTCTTCACCGAGATTAGATTCGCCAGCGCCCGGAGTGACAGCCTC
TACCGTCATGACTCCAACTCTAGCGAGTCCGTCGAGCGGCGCTGAGGCCCCGGCGGAGGA
GTCACCTCGCGCGCCACCCTCTCCCACCCCCCTCGCGACGCTCCCTATCAATGAAGACTC
TAACGATGCCAAGTCAGACAAGGTGACGGTGGCGACGCAGACGGGCTGCGCGGAGACCGC
AACGAGCGCGGCGGG
(1575 bp)

- SilkBase 1999-2023 -