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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24260_g1_i1
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		splicing_factor_3A_subunit_3_[Bombyx_mori]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:18.40 TPM:9.57
ORF EntryO_BomoMSG13268_complete:A_BomoMSG_c24260_g1_i1
Sequence
(Nucleotide)
TATACATTTCATACATACTACTTCAATGAATAAAATATATCTAAAAAACGTTGATGATTT
GATTCTTCATTATTGTTATTATCTAAAATATTGATTTCAATACTCAGTAACGTAAATTTA
GTACAGTTGATTCAACTGAGTTGAAGCATATTTTGTATGCTACCATATATTTTCTCACAT
AATTTAAACTTCAAAATCATTAATCATTATTTTAATATTATTGTATTTTACAAGGTGATT
GACATAAAACAATTTCTATAACCTTTAAAAATGGAAACAATTTTAGAGCAACAACGAAGC
TACCATGAGGAAAGGGAAAGAACCATGGACGCAATGGTCAAAGAAATTCTTCACAAAAAA
ACTGGGCATCGGGAGACTATAAATGCTGATCATCGTTTGAAGAATTTACATGATAGATAT
ATTGAAGCCTCTATAAGACTTAAAGAATTGTATGAAGATAAAGATGGATTACGAAAAGAA
GAAATATCAGCATTGTCAGGTCCACATGAGTTCCAGGAGTTCTATTCGAGACTTAAGCAA
ATTAAAGAGTTTCATAGAAAACATCCAAATGAAATATCTGTACCCATGTCTGTAGAATTT
GAAGAGTTGGCAAATCAAAGGGAAAATCCTGCTGAGGATTACACAGTTCCTGTCGAGTTC
ACTGATGAAGAAGGCTATGGAAAGTATTTGGACCTACATTCGTGTTATGAAAAGTACATT
AACTTGAAAGGTATTGAGAAAGTAGATTATATTACATACTTGAGCATATTTGATCATCTC
TTTGACATACCTCGTGAAAGGAAGAATAGTGAATACAGGAATTACATTCGTGCATTGCTC
ACTTATATGAAAGATTTTGTGTCCAGAGTTAAACCTCTTTTGGATCAGGCTCAAGAAATG
GCTCTAGGGCATCAGGAGTTTTTAAAACAATGGGAGTCTGGTACATTTCCAGGATGGCCT
AAAGAAACTGGTGGAGCTTTAACAAATGTGGGGGCGCATTTAGATCTGTCGGCTTTTTCA
TCATGGGAAGAGTTGGCGTCTCTTGGCCTGGACAGATTAAAATCAGCTCTTATGGCTCTC
GGCTTAAAATGTGGTGGAACTTTGGAAGAAAGAGCACAGAGGTTGTTTAGCACTAAAGGT
CAAACAGCCCTTGACAAGTCTCTTGTTGCGAAAAAGGGAAATAAGGCAAAGGCTACCACA
CAACAAAGACAAAAAGACATTGCTGCAATTGAAGCACAGGTTTATAGGTTCGCGACTATA
ATAAGTAGTACACGAGCATCAACTATTGAAAATGTAACGCGTCGTGCTGCAAGAGCTGCT
GGTGAACGTCGCGACGAAAGCGGTGACGAAAGTGATGCTTCTGCAGCACCAGACCTTGAT
TCAGATGATGATGAAGTGCCATATAATCCTAAGAATTTGCCACTGGGATGGGATGGAAAG
CCTATTCCATATTGGTTATACAAGTTACACGGTCTCAATATAAGCTACAATTGCGAAATT
TGCGGGAACTATACATACAAGGGACCGAAAGCGTTTCAGAGACATTTTGCGGAGTGGAGA
CACGCTCACGGAATGCGATGTCTTGGAATACCGAATACAGCTCATTTTGCCAATGTCACA
CAAATTGAAGATGCCCTTGCTTTGTGGGAGAAAATTAAACAACAGAAAGAAACTGAACGT
TTCGTGGCAGAGAATGATGAAGAATTTGAAGATTCTCAAGGCAATGTTGTAAATCGTAAG
ACTTTCGAAGATTTAAAACGCCAAGGACTTCTATAAGGAGTTTTTTCATGGTTCTTATTT
TTATGATTCGTATGAAATAAATATTTCGTGTATAGATGTTGTTAGCTTTATTTTAAAATA
AAATTTGCAATCTGTATGAACTTTGCGCCAAAAAAAA
(1897 bp)

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