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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c24167_g1_i2
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		exosome_complex_component_RRP46_isoform_X1_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006401 P RNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
Transcript
Level		FPKM:8.33 TPM:4.33
ORF EntryO_BomoMSG13065_complete:A_BomoMSG_c24167_g1_i2
Sequence
(Nucleotide)
GGAAACCTATATAGGTATATATACTATATAGGTCTATGTGTTTTCTATATTTTTCTTGTT
ATTAAAATAAATAAAGATCATCTTTGAATTTTAGAAAATCAGAAACCCAATTAGCAATCA
AGTTTCATTGTACTACTTCAAGATATATTTAAACATTTGAACGAATTAAATATGGTGACT
GATATGAAGGATGTACAGGATTTTAAATTAAAACCTATGAAATGTGAATTCAACTTCCTG
AGCAAATCTGATGGATCAGCTATTTTATCACAAGGGGATACTGTATCATTGGTGAGCGTA
AATGGACCTTTAGATATAAAGATGACCAGTCAACGAATAGATAAGTCAACTCTTGAGGTT
TTGTTCAGTAATAAGAATGGGAAACCGAGCGTGGAAAACAGATACAAAGAGAATATAGTG
AAACAGACATGTGAAGCAGCAATACTTGGTTCTCTGTATCCTAGAACTGGTATAAATGTT
ACTATACAGGAACTAGAAGATTATGGTGGTTTTCTAGCATGTACATTGAACTGTACTTGC
CTAGCGTTGTTAAACTCTGGCGTTTCGATGCGGAATGTTTTCGCTGCAGTCAGCTGTGCG
GTGGACAATCAAGGCAACGTCATTCTAGATCCGACGCATGCACAGCTACAGACTTCCACA
GCCACGATGACGTTCGTGTTTGACAGCAGAGATAAGAGTTTGATTACTTGTTTTACTGAT
GGATGCTTCAGCCAAGACGCCTACAGAGAGGCGCTGGAGCGAAGCAGATCAGCCAGCGAT
CTCGTTTTCGCGTTCTACAGGGATACAATCAGGAAATATTGTAATGTCATTGGATAATAA
ACTTTATTGCTTTCAAAAAAAAAAAAG
(867 bp)

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