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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23866_g2_i1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_SDIR1-like_isoform_X1_[Papilio_polytes]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0038018 P Wnt receptor catabolic process
GO:0046872 F metal ion binding
GO:0072089 P stem cell proliferation
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000051 P negative regulation of non-canonical Wnt signaling pathway
Transcript
Level		FPKM:3.16 TPM:1.65
ORF EntryO_BomoMSG12546_complete:A_BomoMSG_c23866_g2_i1
Sequence
(Nucleotide)
ATTAAATGAAGCCTTCCCAACGTTTTGTTTATTGGATTCATATACAAATAGCAGTGCCAA
ATTTTCAAATCGATAATCTCGATTCTATACTAACGTACGAGCACATCACTAAACCACAAA
AAATTACTGTAATTCTAGCATCACATCGACCTATCTCTCTCCCACAGCGCCAAAATAGAC
AGAGATAAAGATAATGCTAATTAAAAGACATTTCATGTCATCAAATCTGGATCAATGTAT
AGTTACATCAAAACATAAATATTTTCGTTGACTTGGTATTTTTTAATTTCGATTATTTTT
AATTAATAATGAGTGTACGCGAGGAAGACAGGCAGAAAACGGGATGCACTGGTCGCGGCC
TTGGGATCGCGGCCGCGGTCGGTGTCGGCGTTGGTGCTGCTTTGTATTACTTCTTAAGCA
AAAGGCCTGAGCAACCCGATACTGAGGGTTCCACCAGTTCTGCGTGGGCATACAACGATC
ACAGTGCTTTAGCGGAAGACAGCCAGATAAATAGGCTCAGGGATGAGCACTTCCGTAAGC
GCTCGTGGTCGTTGGAAGAATGCTCCATCTGCTTCGAGATCATGCTGAAGGATCAGGAGC
TGATGGCCCTACCGTGCACCCACAATTTTCACTCGCAGTGCATCATGCCCTGGCTTCAGG
AGAAACAGACGTGCCCCAATTGCCGGAAGGACGCCTGATCGAAGGTGATAAAGGAAGTAA
AAAGCGCTGACTGGATCAATGTTTTTTTTGTTATTGTATGTGAGACGTTAGTTCCCGGCT
CGGTAGTTTGTTTTAGCCGGTTATCGTCGCGACACACACACTGGGTCTGGACAAACCAAT
CGATCCCTGGTCGGGGATGGATACGGAACTTGCCCAGCAAGGTATCCTAGGTCCCCGATG
TACGTCTAGGATTCAACAAATAGTGTAAATGCACATACGCACCTGGGACTGCCACACGGA
GCTCCTGGACGCGTGCACTGTTCTAGAATCACTAGGCCTTGTTAATGTATTATAATTTAA
CTTCACCCGCGG
(1032 bp)

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