SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23778_g1_i4
Scaffold_idBomo_Chr20
NCBI non-redundant
(nr)		three_prime_repair_exonuclease_2_isoform_X1_[Bombyx_mori]
Ontology
GO:0003676 F nucleic acid binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0006259 P DNA metabolic process
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0032405 F MutLalpha complex binding
GO:0032407 F MutSalpha complex binding
GO:0032558 F adenyl deoxyribonucleotide binding
GO:0035458 P cellular response to interferon-beta
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:1.94 TPM:1.01
ORF EntryO_BomoMSG12391_5prime_partial:A_BomoMSG_c23778_g1_i4
Sequence
(Nucleotide)
CTCAAAATGTTGCAGGAACTCGGAGACTGACTGTACAGATGAAATTGACTTTTACAAACC
CTCAACGTCTATGCAAAACATCAATGAATCCACACCAAAACGCCAAAAAATTGTATTGAA
TCAAATACAACTGAAAAAGAAAGCTGTACGTAAATTATTTTATGAAAATGGTGAAAAGCC
AAAGAATACATACAGACTGCAGGATGTATACAGAAGAAAATTAGGACGATTACCACGTGG
TGAAGCTCACAGGGCAGAGAATGATTGTATAATGGCACTCGAAATAGCTACTGTTTATGG
TAAACTGTTTGTGGACTGGATTGATAAGAACTCCACATTGTTTAGTGAAGTGAAACCTAT
GACTATTGGTGTTAAACTCGGTTACTAGTCACATAAAAGTAGTGAGGGGACCCACTCTCT
ACAAATTGAAGATTAGTGAGTGAAGTTAAAAAAAAGGTGCTTTAGATTATTTTATGGATA
AATGTAATATAAGAGGGAAGCTCTTGTACTGAGTTTTGCTCAATAGACTGAGTGAGGAAC
TAGTACATACTCTAAAATCAGAAGCAGAAAAATAATTATTTCATTTGATCACAACAAGTA
ACTTTAAAGTTGTAACTTTATTATTTAATCTATTAACATATCAAAATTTAATGAACTCCC
AATTTTTGAGAATTAATTCAGTTATTTTAGTCTATTACATTCTTTGACTGTTTCGTGACC
AAAGATATGGCTGGCTACAGATGACGATACTGAGCCTGTTTAAGTCAAAAACTTGTTTTT
CATTTTATAATATTTTTAAGACAAATTTTATACTATTTTAAAGCAAC
(827 bp)

- SilkBase 1999-2023 -