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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23694_g1_i4
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
Transcript
Level		FPKM:2.59 TPM:1.35
ORF EntryO_BomoMSG12259_complete:A_BomoMSG_c23694_g1_i4
Sequence
(Nucleotide)
TGCTCTTCCGATCTCACAGTTTGTGTACGAAACCGGCATGCAGCTGCATCCTTACCAGCT
AGAGGGTCTCAACTGGCTTCGGTATTCCTGGGGACAAGGCATCGACACCATACTGGCTGA
CGAGATGGGTCTCGGTAAAACCATCCAAACCGTTACATTCCTATACTCTCTATTCAAGGA
AGGCCATTCTAAAGGACCTTTCTTGGTGTCCGTGCCGCTATCCACAATCATTAATTGGGA
GAGGGAATTCGAGCTATGGGCACCGGACTTGTACTGTATAACATATGTAGGTGACAAAGA
TTCGAGGGCTGTGATCCGAGAGAATGAACTAACATTTGATGACGGTGCTAACAGAGGTGG
CAGACCTTCTAAAATCAAGTCGCAAGTGAAATTTAATGTTTTACTCACTTCCTATGAATT
GATCTCAATTGACTCTACGTGCTTAGGATCTATAGATTGGGCAGTTCTCGTTGTAGACGA
AGCCCACAGACTGAAGAGTAATCAGTCGAAATTTTTCAGGCTTTTGGCCGGTTATCACAT
CAATTATAAATTGCTTCTTACGGGTACACCACTACAGAATAACTTGGAAGAGTTGTTCCA
TCTTCTCAATTTCTTAAATAAAGACAAGTTCAATGATCTCGCAGCATTCCAGAATGAGTT
CGCTGACGTTTCGAAAGAAGAACAGGTGAAGAGGCTCCACGAAATGCTAGGGCCTCACAT
GTTGCGACGTTTGAAAGCTGACGTACTGAAAAACATGCCTACTAAGTCAGAGTTCATTGT
CCGTGTAGAATTATCGCCCATGCAAAAGAAATATTATAAATACATTCTAACTAGGAATTA
TGAAGCTTTGAACCCCAAGAGTGGAGGTCAAACTGTTTCACTACTTAACGTCATGATGGA
CCTGAAGAAATGTTGTAATCATCCTTATCTATTCCCAGTCGCAGCGGAGGAAGCTCCGTT
AGGTCCGCACGGAAATTATGACACGCAAGCTTTGATCAAAGCTTCTGGAAAACTCGTGCT
CCTATCTAAAATGTTGAAACAATTGAAAGAGCAGGGTCATAGGGTACTGATTTTCTCACA
GATGACGAAAATGTTGGATATACTTGAAGACTTCTTGGAGGGTGAGGGATACAAGTATGA
AAGAATTGACGGTGGTATCACGGGAACGATCCGTCAAGAAGCCATAGATAGGTTTAATGC
CCCGGGAGCCCAACAGTTTGTGTTCCTCTTGTCGACAAGAGCGGGAGGTCTGGGCATCAA
TTTGGCGACCGCCGACACTGTTATCATTTATGATTCCGATTGGAATCCTCACAATGACAT
TCAAGCTTTCTCTCGAGCGCATCGTATTGGCCAAGCCAACAAAGTTATGATTTATCGTTT
TGTAACACGTAACAGCGTCGAAGAAAGAGTCACCCAAGTCGCTAAACGAAAAATGATGTT
AACGCATTTGGTGGTGCGACCGGGCATGGGCGGAAAGGGAGCTAACTTCACTAAGCAAGA
GTTGGATGATATTCTTCGATTCGGTACTGAAGAGCTGTTCAAAGAAGAGGAAGGCAAAGA
GGAGGCTATTCATTATGACGATAGAGCTGTGGGTGAATTACTCGATCGGTCTAAGGAAGG
AATAGAACAGAAAGAATCTTGGGCTAATGAATATCTTAGCTCTTTCAAAGTTGCTAGTTA
TTCCACTAAGGAAGGCGATGGTGAAGAGGAAGTCGATACAGAAATTATAAAACAGGAAGC
AGAGAATACTGATCCTGCGTACTGGATCAAACTTCTCAGGCATCACTACGAACAACATCA
AGAAGATCAAGCGCGGACGCTTGGGAAAGGCAAACGTGTACGTAAACAAGTTAACTACAA
CGATGGAAGTGTTGCGCAGACAGAAAACAGAGAGGATTCTACTTGGCAAGAGAATGGCTC
GGACTATAATTCCGATTTCTCTCAAGGTAGCGAGGATGACAAAGAAGACGACGATTTTGA
TGAAAAGAATGATAATGGAGATCTGCTCAGTCGCCGGAGTAAGCGTCGCCTCGAAAAGCG
AGAGGAACGCGACCGACCGCTGCCTCCATTACTGGCCAGAGTCGGCGGCAACATGGAAGT
TCTCGGCTTCAACGCCAGGCAGAGGAAGTCATTCCTCAATGCTATCATGCGGTACGGGAT
GCCACCGCAGGACGCTTTCAACTCGCAGTGGTTAGTGAGAGATCTGCGCGGGAAGTCTGA
GCGCAACTTCAAGGCCTACGTGTCGTTGTTCATGCGCCATCTCTGCGAACCGGGCGCCGA
CAACGCGGAAACATTCGCGGACGGCGTTCCGAGGGAAGGATTATCCCGTCAGCACGTTTT
GACACGAATCGGGGTAATGAGTTTGATCAGGAAAAAGGTTCAGGAATTCGAACACATCAA
CGGGTACTACAGCATGCCGGAACTGGTGAGAAAACCAGTTGAGCCGGTGAAAGTGTCTGG
GGCGAGTGAGAGTGCCGCCCCCAGTCCCGCGCCCTCCACCGCCACACCCATCACCTCCGC
AGCACCCTCGCCCGCACCCACCTTGCTGCCTCACGGACAGGCAGCCACGCCCGCCACGCC
CTCTGGCTCTGACAAGGACGATAAAGAGGAAACTAAAGATGACAAATTGGAAGTTAAAGA
TAAACTCAAAGCAGAACCGATGGATACGGCCGATGTCAAGGAGGATAGTGCGGAAGAAAA
AGAATCACAAAAAGAAGACGAGAAAGAGGCCGAAAGACGTATGTCCGTTGACGAGGAACC
TCCAAAAGATGAAGATAAAACTGATGAAAAGAAAGAAGGCAAAGAGTCACCTAAAGTTAA
AGACGAATTGAAGGAAGAGACCGACAAGAAAGAGGATGTAAGAAGTGAAAAGGCGGCATC
TGACGTCTCTGAGAAACCAAAAGAGGAGAAGAAGGAGGACGACGACGATGACGTTGTTCT
GGTTAAAGAAGAGGAAGATCTCAAAGTAGAACGTCGCAAGTTCATGTTCAATATCGCCGA
CGGAGGCTTTACCGAACTCCATACTCTGTGGTTGAATGAAGAGCGAGCCGCCGCGCCCGG
CAGGGAATACGAAATCTGGCACCGAAGACACGACTACTGGCTGCTGGCCGGAATCGTCAC
GCACGGATACGGTCGCTGGCAGGACATACAGAACGACCTGCGATTCGCGATCATTAACGA
GCCATTCAAGATGGACGTCGGCAAAGGAAACTTCCTCGAGATTAAGAATAAGTTTTTGGC
TCGGCGTTTTAAGCTTTTAGAACAAGCGTTAGTGATCGAGGAGCAGCTCCGTAGAGCGGC
ATACTTGAACCTCACACAAGATCCGAACCATCCCGCAATGTCCTTGAACGCGCGGTTCGC
TGAAGTCGAGTGTCTTGCTGAGTCCCACCAGCATCTCAGCAAGGAGTCCCTCGCTGGGAA
CAAACCAGCCAACGCGGTGTTGCACAAGGTGCTGAACCAGCTGGAAGAGCTGCTGTCGGA
CATGAAGTCGGACGTGTCGCGGCTGCCGGCCACGCTGGCGCGCATCCCGCCCGTCGCGCA
GCGCCTGCAGATGTCGGAGCGGTCCATCCTGTCGCGCCTCGCAGCCACCGCAGGCAACCC
CGTGCCCGCTGCCCAAATGCCGCAGTTCCCGACCGGCTTCCAGCCCGGCGGCACGCTCCC
CGGGTTCGCGGCGTCGGCCGCGACGGCGGCTAATTTCTCCAACTTCCGACCGCAGTACTC
CGTGCCCGGACAGCCTACATCATCCTCTAACTCGAATAAATCATAAACTCCGTAATTTAA
ACAACTATATTCGATTTGACGTAACCCGCAGCGAGCGGATATGTCGCCGCGTAGGTGAAT
TAGATGTAAGCTTTTTTGAAGATTCCTGTTTCCACATCGGCTCCGAAGTCATAATTATAT
TTGTGATTAGTTCAGATAGATTACATGACGTCATAGCGAAAATAACTCATAATATTATTT
ATTTCATCCTGATCTGTATGAATCTTTTCTATCG
(3994 bp)

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