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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23694_g1_i2
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
Transcript
Level		FPKM:6.21 TPM:3.23
ORF EntryO_BomoMSG12249_complete:A_BomoMSG_c23694_g1_i2
Sequence
(Nucleotide)
GTTGCTGGCTCGTCGAGAAGTGACGGCGGCATCAATTTCTGAATTAATTACCATTTGTCG
CAAAAACTGCGCGTCCTTTATCTTTTCTAGCCAAAAATCTATCATCTTATTCCAAGTTGT
GTTTGATAGTAATCTAAATGGCATCAGATGAGGAAGTGGACGGCTCTTTTGCAGGTGATG
AGGAAGTAGAGGAAGGTGAGGGTCAAAATGACAATTCCGGAGATAGTGACGAGGCTCCAC
CAAAGGAAGATGAAGATTATTCCCCTGAAGATGGTAGAAAAAAGAAAAAGGGAAAGAAAA
GGAAAGCCAGAGGAGAAGAAAAAAAGGGAAGAAAGAAAAAGAAGAAGCGAAAGAATGAAA
GTGAAGATGATGATGATTTTGGCCTCGAGATGGAAGCAGAAGGTGACAGTGATTATGCAC
TGAGCGCTGTCTCTTCAAGCAAGAAATCCCGTAAAGGTCGAAGTAGCAAACACAACACAC
CATCCACAACTACAGCATCAGACTCTGGCTCTGGTATGCCAACAGTCGAGGAGGTGTGCT
CCTCGTTCGGCCTTACCGATGTTGACATACAATATGCGGATGCGGACTACGAAAACTTGA
CTACATACAAACTGTTTCAACAACATGTTCGTCCAATGCTCGTTAAAGAGAATCCAAAGG
TGCCAGTATCAAAGTTAATGATGCTAGTAGCTGCAAAATGGCGGATGTTCTGTGAAACGA
ATCCACACTTAAGCACTAGTGTACCACAAAGTATGGGCTCTGAAGAGAATACAAATACTT
CTGCTACTTCTGACTATGTCTCTAAGAGACCCGGACGCACACCCAAAGAAGCAAAGACTG
ATGAGACAATAGAGGAGCCCGAAGAAGAAGAGGAGGAAGAAGCAAGTGACGAAGGCGCTA
CTGTGCCGCGGAAACGTGGACGCAAGCCCAAGAATGCGACCGGCGCCGTCACGCCACGAG
GCAAGCCCGGCAGGAAGCCTAAAGTACCTACACTGAAGATCAAGTTCAGCAAGAGAAAAC
GAACCAGCAGCGAGGAGGAACAAGAAGGCAGCGCTGTAAATTCAGATTCAGACGCCGAGT
TCGAGCAGATGTTAGCTGAAGCCGAGGAAACAAAGCCTCCTGTTGCAGCTGCAGCTGACG
AAGCCGCGCCACCTAAAGAAGAAGATCCTACAGCGGCGCTACCTAAAAAGAAGGCAAAGA
CAAAGATCGGAAACAAATCTAAAAAGAAAAGGAAGTTGAAGACGACCAGCAAGTTTCCTG
ATGGTGCTGAGGGAGAGCACGAACATCAGGACTATTGTGAGGTGTGTCAGCAAGGCGGCG
AGATAATTCTGTGTGACACATGTCCACGGGCCTACCACCTCGTGTGCCTCGACCCCGAGC
TCGAGGAGACGCCGGAGGGCCGCTGGTCGTGTCCGCACTGCGAGGCCGAGCCCGCACCCG
ACAATGACGACGACGATGAACATCAGGAGTTTTGCAGAATTTGTAAGGACGGCGGCGAGT
TGTTATGCTGCGATTCTTGTCCTTCAGCGTATCATCGGTTCTGCTTGAATCCGCCGCTTG
AAGAAATTCCCGATGGCGAGTGGAAATGTCCCAGATGCAGTTGTCCACCATTGGATGGAA
AAGTGGCCAAAATTTTAACTTGGCGTTGGAAGGAACAGTCAAGCAAGTCCAAGGCTCCGC
GTTCAAGAGAATTTTTTGTGAAGTGGCATGAACGATCTTATTGGCACTGCAGCTGGATAT
CTGAACTACAGCTCGACGTGTTCCATCCACTAATGTATCGTTACTACATGCGTAAGTCGG
ATCCCGAAGAACCGCCTAAACTTGAAGAGCCCCTCGATGAACGAGATAGTAGGTACAAAC
GACTCAAAGATAAACAACAGGATACGGAATCTAACAACGAAAAATTACTCGAAGAGAAGT
ATTATAGATATGGCGTCAAACCTGAGTGGCTTGTAGTACACCGTGTGATCAACCATCGCA
CTTCAAGAGACGGCACTACATACTTTTTAGTCAAATGGAGAGATCTCTCATACGATCAGG
CCACGTGGGAATCTGAGCATGAAGACATTGCCGGACTCAAGCAAGCCATGGACTATTATC
AAGACATGCGAGCGTTCATAACGTCAGAGGGTAAGACTAAAGGCTTCAAAGGTAAGAAAC
CAGGTCGCAAAAGTAAGAACAAAGACCTCACGGACGAAGACGACAGCAGCGCCGGCCTAC
AAATGCGCCCCAAGAAATACAATCCGCCGCCTGATCGTCCTACCAGTAATCTCAATAAGA
AATACGAAGACCAACCACAGTTTGTGTACGAAACCGGCATGCAGCTGCATCCTTACCAGC
TAGAGGGTCTCAACTGGCTTCGGTATTCCTGGGGACAAGGCATCGACACCATACTGGCTG
ACGAGATGGGTCTCGGTAAAACCATCCAAACCGTTACATTCCTATACTCTCTATTCAAGG
AAGGCCATTCTAAAGGACCTTTCTTGGTGTCCGTGCCGCTATCCACAATCATTAATTGGG
AGAGGGAATTCGAGCTATGGGCACCGGACTTGTACTGTATAACATATGTAGGTGACAAAG
ATTCGAGGGCTGTGATCCGAGAGAATGAACTAACATTTGATGACGGTGCTAACAGAGGTG
GCAGACCTTCTAAAATCAAGTCGCAAGTGAAATTTAATGTTTTACTCACTTCCTATGAAT
TGATCTCAATTGACTCTACGTGCTTAGGATCTATAGATTGGGCAGTTCTCGTTGTAGACG
AAGCCCACAGACTGAAGAGTAATCAGTCGAAATTTTTCAGGCTTTTGGCCGGTTATCACA
TCAATTATAAATTGCTTCTTACGGGTACACCACTACAGAATAACTTGGAAGAGTTGTTCC
ATCTTCTCAATTTCTTAAATAAAGACAAGTTCAATGATCTCGCAGCATTCCAGAATGAGT
TCGCTGACGTTTCGAAAGAAGAACAGGTGAAGAGGCTCCACGAAATGCTAGGGCCTCACA
TGTTGCGACGTTTGAAAGCTGACGTACTGAAAAACATGCCTACTAAGTCAGAGTTCATTG
TCCGTGTAGAATTATCGCCCATGCAAAAGAAATATTATAAATACATTCTAACTAGGAATT
ATGAAGCTTTGAACCCCAAGAGTGGAGGTCAAACTGTTTCACTACTTAACGTCATGATGG
ACCTGAAGAAATGTTGTAATCATCCTTATCTATTCCCAGTCGCAGCGGAGGAAGCTCCGT
TAGGTCCGCACGGAAATTATGACACGCAAGCTTTGATCAAAGCTTCTGGAAAACTCGTGC
TCCTATCTAAAATGTTGAAACAATTGAAAGAGCAGGGTCATAGGGTACTGATTTTCTCAC
AGATGACGAAAATGTTGGATATACTTGAAGACTTCTTGGAGGGTGAGGGATACAAGTATG
AAAGAATTGACGGTGGTATCACGGGAACGATCCGTCAAGAAGCCATAGATAGGTTTAATG
CCCCGGGAGCCCAACAGTTTGTGTTCCTCTTGTCGACAAGAGCGGGAGGTCTGGGCATCA
ATTTGGCGACCGCCGACACTGTTATCATTTATGATTCCGATTGGAATCCTCACAATGACA
TTCAAGCTTTCTCTCGAGCGCATCGTATTGGCCAAGCCAACAAAGTTATGATTTATCGTT
TTGTAACACGTAACAGCGTCGAAGAAAGAGTCACCCAAGTCGCTAAACGAAAAATGATGT
TAACGCATTTGGTGGTGCGACCGGGCATGGGCGGAAAGGGAGCTAACTTCACTAAGCAAG
AGTTGGATGATATTCTTCGATTCGGTACTGAAGAGCTGTTCAAAGAAGAGGAAGGCAAAG
AGGAGGCTATTCATTATGACGATAGAGCTGTGGGTGAATTACTCGATCGGTCTAAGGAAG
GAATAGAACAGAAAGAATCTTGGGCTAATGAATATCTTAGCTCTTTCAAAGTTGCTAGTT
ATTCCACTAAGGAAGGCGATGGTGAAGAGGAAGTCGATACAGAAATTATAAAACAGGAAG
CAGAGAATACTGATCCTGCGTACTGGATCAAACTTCTCAGGCATCACTACGAACAACATC
AAGAAGATCAAGCGCGGACGCTTGGGAAAGGCAAACGTGTACGTAAACAAGTTAACTACA
ACGATGGAAGTGTTGCGCAGACAGAAAACAGAGAGGATTCTACTTGGCAAGAGAATGGCT
CGGACTATAATTCCGATTTCTCTCAAGGTAGCGAGGATGACAAAGAAGACGACGATTTTG
ATGAAAAGAATGATAATGGAGATCTGCTCAGTCGCCGGAGTAAGCGTCGCCTCGAAAAGC
GAGAGGAACGCGACCGACCGCTGCCTCCATTACTGGCCAGAGTCGGCGGCAACATGGAAG
TTCTCGGCTTCAACGCCAGGCAGAGGAAGTCATTCCTCAATGCTATCATGCGGTACGGGA
TGCCACCGCAGGACGCTTTCAACTCGCAGTGGTTAGTGAGAGATCTGCGCGGGAAGTCTG
AGCGCAACTTCAAGGCCTACGTGTCGTTGTTCATGCGCCATCTCTGCGAACCGGGCGCCG
ACAACGCGGAAACATTCGCGGACGGCGTTCCGAGGGAAGGATTATCCCGTCAGCACGTTT
TGACACGAATCGGGGTAATGAGTTTGATCAGGAAAAAGGTTCAGGAATTCGAACACATCA
ACGGGTACTACAGCATGCCGGAACTGGTGAGAAAACCAGTTGAGCCGGTGAAAGTGTCTG
GGGCGAGTGAGAGTGCCGCCCCCAGTCCCGCGCCCTCCACCGCCACACCCATCACCTCCG
CAGCACCCTCGCCCGCACCCACCTTGCTGCCTCACGGACAGGCAGCCACGCCCGCCACGC
CCTCTGGCTCTGACAAGGACGATAAAGAGGAAACTAAAGATGACAAATTGGAAGTTAAAG
ATAAACTCAAAGCAGAACCGATGGATACGGCCGATGTCAAGGAGGATAGTGCGGAAGAAA
AAGAATCACAAAAAGAAGACGAGAAAGAGGCCGAAAGACGTATGTCCGTTGACGAGGAAC
CTCCAAAAGATGAAGATAAAACTGATGAAAAGAAAGAAGGCAAAGAGTCACCTAAAGTTA
AAGACGAATTGAAGGAAGAGACCGACAAGAAAGAGGATGTAAGAAGTGAAAAGGCGGCAT
CTGACGTCTCTGAGAAACCAAAAGAGGAGAAGAAGGAGGACGACGACGATGACGTTGTTC
TGGTTAAAGAAGAGGAAGATCTCAAAGTAGAACGTCGCAAGTTCATGTTCAATATCGCCG
ACGGAGGCTTTACCGAACTCCATACTCTGTGGTTGAATGAAGAGCGAGCCGCCGCGCCCG
GCAGGGAATACGAAATCTGGCACCGAAGACACGACTACTGGCTGCTGGCCGGAATCGTCA
CGCACGGATACGGTCGCTGGCAGGACATACAGAACGACCTGCGATTCGCGATCATTAACG
AGCCATTCAAGATGGACGTCGGCAAAGGAAACTTCCTCGAGATTAAGAATAAGTTTTTGG
CTCGGCGTTTTAAGCTTTTAGAACAAGCGTTAGTGATCGAGGAGCAGCTCCGTAGAGCGG
CATACTTGAACCTCACACAAGATCCGAACCATCCCGCAATGTCCTTGAACGCGCGGTTCG
CTGAAGTCGAGTGTCTTGCTGAGTCCCACCAGCATCTCAGCAAGGAGTCCCTCGCTGGGA
ACAAACCAGCCAACGCGGTGTTGCACAAGGTGCTGAACCAGCTGGAAGAGCTGCTGTCGG
ACATGAAGTCGGACGTGTCGCGGCTGCCGGCCACGCTGGCGCGCATCCCGCCCGTCGCGC
AGCGCCTGCAGATGTCGGAGCGGTCCATCCTGTCGCGCCTCGCAGCCACCGCAGGCAACC
CCGTGCCCGCTGCCCAAATGCCGCAGTTCCCGACCGGCTTCCAGCCCGGCGGCACGCTCC
CCGGGTTCGCGGCGTCGGCCGCGACGGCGGCTAATTTCTCCAACTTCCGACCGCAGTACT
CCGTGCCCGGACAGCCTACATCATCCTCTAACTCGAATAAATCATAAACTCCGTAATTTA
AACAACTATATTCGATTTGACGTAACCCGCAGGTAAAACATAGAATAATAATTTAATTCT
TAGGCTAGAAGTGACATGCTTGACGGCCCGTTTAGATTTTCTCGCTGGTCGATATGCACG
TTGAAATAAATTATCGAGAGCTCAAACAATAACGTGATTATTGTATCATTTTGTTTTAGC
GAGCGGATATGTCGCCGCGTAGGTGAATTAGATGTAAGCTTTTTTGAAGATTCCTGTTTC
CACATCGGCTCCGAAGTCATAATTATATTTGTGATTAGTTCAGATAGATTACATGACGTC
ATAGCGAAAATAACTCATAATATTATTTATTTCATCCTGATCTGTATGAATCTTTTCTAT
CG
(6422 bp)

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