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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23621_g1_i2
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		periodic_tryptophan_protein_2_homolog_[Bombyx_mori]
Ontology
GO:0000028 P ribosomal small subunit assembly
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
Transcript
Level		FPKM:14.88 TPM:7.74
ORF EntryO_BomoMSG12089_complete:A_BomoMSG_c23621_g1_i2
Sequence
(Nucleotide)
GTAAAAACAAATAGATTCACATTGTGGTTCTAAGTTTATTTATGAACCGAACACAATTTC
ACGATGAATATGGTGTGATTCTTTATGCAGTTGTTTCAAATATTAAGAGCAAATTCAATA
GAATTATTACATAGTTACGAAGCACTTTAGTCACCATGAAGTTTAATTATAAGTTTCAAA
ATTTACTCGGAACAGTTTACCGTAAAGGTGATGTGCTCTTCAGTAAAGATGGAAATTGCG
TTATCAGTCCAGTTGGTAACAGAATAACCATATATAATTTGAAACAGAATAAAAGTAACA
CTCTATCATTTGAAAGTCACTACAATTATACAGCTGTTGATATTGCACCAAATGGAATGA
CATTGTTGGCTGTTACGGAAAAGGGTGAAGCACAAATTATAAGTCTTACAACTTCTGTGG
TGTTACACAAGTATAAGTTCAAGCAGCAAGTGAATGCGGTTAAGTTTAGTCCTGATGGAA
AATACTTTGCCGTGTGCTGCGATAATACAGTATTCGTGATGACAGCACCGGTACATTTCA
CCGGCGAATACCGGCCCTTCATCATGAAACGTGTCTTCAAGAAAGCCCTAGACGAAGTGA
CGTGTCTGGACTGGTCGTCCTGCTCGAGACTCCTGGCGGTCGGATCGAAAGACACGACAA
CGAAGATTCACACCGTCGAATATTTAGAGAACATCACTATGTATTCGCTCAGCGGACACA
CAGATAAAATTATCGGTGTCTTCTTCGAGAGGAAAAGCTTAGATCTGATAACGGTCAGTA
GGAACGGTCAGCTGTGCTTGTGGGAGGCCAGTATAGATGCCGATGAGCTTGCAGTGAAGC
AGGATGACACGTCGCGCAAGAAACGAGTGAGACTGCAGAACGAGGGTAATCTAGAGGAAG
AATTTGACGCAAAGGATGATATTGAGAAAGAAAAGGAATATGACAGCGACAGAGACGCGG
AACAAGAACAGAACAATTCGAAGGTTAACTCTGAAGAGAACGATAAGAGATTGATGTACA
AAAAACTGGGGAGGCACTACATCGGCGATGCGATACGCAACGCCGATCGGAAGGTCAAGC
TCACGGCCGTTCAGTACCACAAGGAGAATAAGCTGCTAGTGACCGGTTTCTCGAGCGGTC
TGTTCTTCTTGCACGAGATGCCGGACGTGAATCTGATCCACACGCTCAGCATATCGGAGC
ACCGCATCAGCAGCATCAGCGTGTCGCCGCCCGGGGACTGGATCGCGTTCGCCTGTCCCA
ACATCGGTCAGCTGCTGGTCTGGGAGTGGCAAAGCGAGCAATACGTGATGAAGCAGCAGG
GTCACTCGTTGGACATGACGTGCCTGGCGTACTCGCCGGACGGGCTGCACGTCGTGACCG
GGGGTTTCGACGGTAAAGTGAAGGTCTGGAACACGACGAACGGCTTCTGCTTCGTGACCT
TCCACGAGCACAAGGCGACCGTGAGCGGCGTCACGTGCAGCGCCAACAAGAAGTTCTTCG
TGTCGTCGTCGCTAGATGGCACTGTACGATGCTACGACTTGACCAGATACCGCAACTTCC
GTACGCTGACGTCACCCAGCCTGGTGCAGTTCAGCTGTGTGGCGCTGGACTCCAGCGGAG
AGTTCTGTGCGGCCGGCGGTCAGGACGTCTTCGAAATATTCGTTTGGTCGATCAAGTTCG
GGAAGTTGCTAGAGGTTCTAGGTGGTCACGAGGCGCCGGTGTCGAGTCTCGCGTTCAGCC
CGACGCTGACCAGCACGCGCCTGGCCTCCGCCAGCTGGGACGGGACGGTCCGTCTGTGGG
ACTGCATCGACCGGGAGGTGCAGTGCGAGCCGATCCGACTCAACTCTGACGCGCTGCAAG
TCGCCTTCAGACCCGACGGGGAAGAGATCGCGGTGTCGACCCTGGACGGCAACATAACGT
TCTTCGAGCCGAGCACGTGCGAGCAGACGGGTAGCGTGGAGGGCAGGTCCGACCTGGGCT
CTGGGAGGGCAGAAACCGACCTGGTCACGCCGCAGACACTCTTGAAAACCAAAGCGTTCA
CAACAATATGCTATTCTGCTGACGGTACCTGCATACTGGGAGGCGGCAACTCGAAGAACG
TTTGTCTTTATAGCGTGAAGGATTCCGTACTCATCAAGAAGTTTGTCGTCACGGAAAATA
GATCTTTGGATGCTGTTAATGACTTTGTGAATCGCCGCAACCTCACGGAGTTCGGGAATA
TGGCGCTACTGGAAGAGAGGGAGGATCTGGAAGGAGGAAACGTCAACATCCGATTGCCGG
GCGTCAAGACCGGGGACATGGCCGATAGGAACGTCAAACCTGAGGTCCGCGTGTACTGCG
TCCGGTTCTCGCCGACCGGGGAGAGCTTCGCGGTGGCCGCCACGGAGGGCCTGATGCTGT
ACAGCCAGAACGCCGGCCTCGACGGTACTTTCAGGCCGTATCGACTGGAGGCGACGTCAA
CGCCGGCCGCGGTGAGGCAGTCCCTCCGAGACGGCGCCTGGGGCTCCGCCCTCACCGGCG
CCCTACAGCTGGCGGAGCAAGCGCTCATACAGGAGTGCCTTGAATCTGTGCCCACTAAAG
ACATATCCCTAACGGTATCGAGTCTAGACGAAGACTACGGCGACCGGCTGCTGAGCACGA
TAGCGCGCCTCCTCGAGGACAGCAGGCACGTGGAGCAGCTGCTGCACTGGACCACGGCGC
TCGTGTCGACGGGGAGACACAAGTTCCCGCCGAGCGCGCTGCTCGCCGTAGAGAAAGTTC
TGACCGTCAAATACTCGCAGTTGAGTAAAATATGTGATTTCAACAAATATACGATAAGGT
GCATAAAGACCGTCGGAGATGTGGTCTTAGAACGAGAAGAAGTTGAGCCCATGGACACTG
ACGGAC
(2886 bp)

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