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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23613_g1_i1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT5_isoform_X2_[Papilio_machaon]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000176 C nuclear exosome (RNase complex)
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007549 P dosage compensation
GO:0008023 C transcription elongation factor complex
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0035101 C FACT complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
Transcript
Level		FPKM:17.06 TPM:8.87
ORF EntryO_BomoMSG12066_complete:A_BomoMSG_c23613_g1_i1
Sequence
(Nucleotide)
CTATGGGTCACACTGTTTCGTGACGTTTGTTGCGTGTTCGTTTTAAAGAAATAAGTTTAG
TAAATATTACCTAAATGGTTCGAATGCATTCGTTTTAAGTAGTAATGTCGGATTCGGAAG
GTAGTAACTATTCGGGGAGTGGGTCCGAGGCAGGCAGTGCTGTATCAAAACAATCACATC
GCAGCGCTGCATCGAATCGGTCGGCAAGATCGCGTTCTATCTCTCGATCAAGGTCCAGGT
CGCGTTCTGGAAGCCGTAGCCCCTCTAGGACTCCATCCCGCTCACGATCTAGGTCTCGCT
CTAGAAGTCGTTCAGTAGGTTCAGATGCAAGTAAAAATAGAGATGATGAAGCCAAAGAAG
CATCTGGCGATGAAGAAGTGGAGGATGAACAAGAGCCCGAAGGTGAGGATTTGGTTGATT
CTGAGGAGTATGAAGAAGACGAAGAAGAGGAGAGGCTGAGGAAGAAAAGAAAAAAGGACA
GTCGTTATGGTGGATTCATTATTGACGAAGCTGAGGTGGATGATGAAGTTGATGAAGATG
ACGAATGGGAAGAGGGAGCCCAAGAAATGGGTATTGTAGGAAATGAAGTAGATGAAATTG
GGCCAACAGCTAGAGAAATTGAAGGTCGAAGAAGAGGCACTAACCTTTGGGATTCACAGA
AAGAGGAGGAGATTGAAGAATATCTTCGAAATAAGTATGCAGATGAATCAGCAGCCCTCA
GACACTTTGGTGAAGGTGGAGAAGAGATGTCTGATGAAATAACTCAGCAAACTCTACTAC
CCGGTATCAAGGATCCAAATTTGTGGATGGTCAGATGTAGGATTGGAGAAGAGAAGGCTA
CTGTTTTACTTTTGATGCGAAAATTTATTGCTTTCCAATTCTCGGAAGAACCTTTTTTGA
TAAAGTCAGTTGTAGCACCAGAAGGAGTCAAAGGCTATGTGTACATAGAGGCTTTCAAGC
AGACACATGTTAAAAACATTATAGACAAAGTGGGAACCCTTAAGTCTGGAGTGTGGAAAC
AAGAAATGGTGCCTATTAAGGAAATGACTGATGTTCTCAGAGTAGTCAAAAAGCAATCAG
GACTTAAACCGAAACAATGGGTCAGATTAAAACGAGGTTTATACAAAGATGATATTGCTC
AAGTTGACTATGTAGACTTGGCACAGAATCAAGTGCATTTGAAACTACTTCCTAGAATAG
ATTATACAAGACTGAGAGGAGCTTTAAGAACAGTACAGAGCGATAGTGAAGCAGCAAAGC
GAAAGAAAAAGAGAAGGCCTCCTGCTAAACCCTTTGATCCAGAGGCAATCCGAGCGATCG
GTGGAGAAGTTACTTCCGATGGTGATTTCCTCATATTTGAGGGCAATAGGTACTCTAGGA
AAGGATTTCTGTATAAAAACTTTACAATGTCGGCGATACTGTCAGAAGGTGTCAAGCCTT
CACTTACAGAGTTGGAAAGATTTGAAGAGCAACCGGAAGGTATCGATATTGAGTTGGCTG
CTCCCGCCAAGGACGACCCTGCCGGCTTGCATTCCTTCTCCATGGGTGACAATGTGGAAG
TCTGTACTGGAGATCTTGCGAACTTGCAGGCCCGCATCACTGCTATCGACGGTTCGATGA
TCACTGTCATGCCAAAACACGATGGTCTTAAGGACCCAATTGTCTTCCATCCGAATGAGT
TGCGCAAGTACTTCAAAATGGGTGATCACGTGAAAGTGGTGGCTGGGCGTTACGAGGGCG
ACACAGGCCTCATAGTGCGCGTCGAACCGCACAGGGTCGTGCTTGTTTCCGACCTCACCA
TGCACGAGCTTGAGGTGCTGCCCCGTGACCTACAGCTCTGTTCAGACATGGCGACTGGCG
TTGACTCCCTCGGACAGTTCCAGTGGGGAGACATGGTGCAACTGGATCCACAGACCGTCG
GAGTTATCGTGCGCCTCGAGAAAGAGAACTTCCACGTGCTCGGCATGCAGGGCAAGGTCA
TCGAGTGCAAGCCGCAAGCGCTACAGAAACGCCGCGAGAACCGGTTTACAGTCGCGCTCG
ATTCCGAGGAGAACACGATTCAGAAGCGCGACATCGTTAAAGTAATCGACGGGCCGCATG
CCGGACGCGACGGTGAAATCAAACATCTCTACCGGAACTTCGCCTTCCTCCAGTCGCACA
TGTACCTCGACAACGGCGGCATCTTCGTGTGCAAGACGCGCCACCTGCAGCTGGCCGGTG
GAGCCAGGGGAAATAATGCCACCGCCGCCGGACTCACGCTCGGCTTCATGTCGCCGCGGA
TAGCTTCTCCTGCACACCCAGGGGCCGGCAGGGGAGGCTCCACCCCTCGCGGTCGTGGGG
GCCGAGGCGGCGGCGGAGGTCGAGGCGTCACTCGGGATCGCGAGCTCATTGGCCAAACCA
TTAAGATCACGGGGGGACCATACAAGGGAAACGTCGGGATCGTCAAAGACGCGACCGGCA
GCACCGCGCGCGTCGAGCTGCACTCCTCCTGTCAGACCATCTCCGTGGACCGCGGGCACA
TCGCCGGGGCGGGGGCCGGGGCTGCGACCGGCGGGGCCTCGTCCTACTCGCGCACGCCGT
CCCGCACGCCGGCCGCCGGCGCCGCCACCCCCACGTACCGCGACACGGGCATCAAGACGC
CTATGCACGGCGCCGCTACACCCGTCTACGAGGTGGGCTCGCGCACGCCACACTACGGGT
CGTCGACCCCGGCGCACGAGGGGTCGCGCACGCCGGCGCACGGGGCCTGGGACCCGAGCG
GTGCCGCCACCCCGGCGCGACCGGACTTCGACTACGAGCCGGACGCGTACGGCGCGGGAC
CGTTCACTCCGCAGACGCCCGGCGCCATGTACGGCTCGGACCACACGTACAGCCCGTACA
GTCCGGGCCGGTCGGAGGGCGAGTCGGCGGAGGCGGGTGCGTGGGCGGCACCAGAGCTCG
TGGTGCGTCTGAGAGCGGGAGCTGCGGACGGTCTGGCCGCACAGACCGCGGTGGTCCGTG
CGACCGGCGGGGGCTCGTGCGCGTTGTACTTACCGGCGGAGGAGCGAGTGGTGTCCGTGC
CGCCGGACTTGTTAGAGCCGGTGCTGCCTCAGGCGGGAGAGCGCGTGAAGGTGATCGCGG
GAGAGGACCGGGACGCGGTCGGACAACTTATCTCCATCGAAAACCAAGAGGGAGTCGTCA
AATTCGGCACCGACGACATCAAAATCATGCAACTACGTCATCTTTGCAAGATGGCCTCTT
AATTCTATCGACCGGTAAATACCTCACAATTGTGTTAATTGTATTTTCATCTTCTGTGGG
AGACGTAAGTTGCTTGTGTTTTTCTCAAATGAAGAAATAACTAAATAAAAAAATGTAAAA
TATTCGAGTTTTTTAATGAAAAATTAGGAATTAATTAAATGTGTAATAAAATTAATCAGG
CAGCCTTAAATTATTTACGAAAAACGGACGCTCCGAATTGAAAACTCACTTTGTGAATAG
AAGTCGAGTAAAAAGAAATCAAGAGCAAGAAC
(3512 bp)

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