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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23344_g1_i3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		probable_ATP-dependent_RNA_helicase_DDX20_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
Transcript
Level		FPKM:7.87 TPM:4.09
ORF EntryO_BomoMSG11569_3prime_partial:A_BomoMSG_c23344_g1_i3
Sequence
(Nucleotide)
GGCTATTTCCCAAAGCTAGAACACTCAATATTTTTAAAGAGTATCTTTACAATTGCTTTG
ACCACATCCAACCATTTCATTTAAACTAAATAGAAAATTATTTCAAGAAAAAAGCCAAAG
AACTCTTGGGAACCATCCAATATTTCAGAATCGAATCAACCACTTTTTAAAGACAGCAGG
CTATCTGAATTGCCGTTATGTCTTTAGCTCATGATATAAGAAACAGCACAAGGACTCGTG
ATGTTCAAATAGTGGAAAATGTTACGTTCACTTCCATGCTTCTTTCAGAATTTACACTAG
CAGGATTGATATCATCGGGGTTCCAAAAACCATCTCCAATTCAACTTCATGGTGTCCCAC
TAGGCAAATGTGGTTTCGATTTGTTACTAGAAGCAAAGTCTGGAACTGGAAAAACTGTTG
TGTTTTCTATAATAGCATTAGAAAAACTAAATCTTAATAATGGTTTGCAAGTAATGATCT
TGACACCTACACGAGAAATAGCAGCACAGATATGTGATGTTATTAAACAAATAGGATCAC
ACCACAAGGGTCTGAATGTCGAAGTTGTAATGGGAGGATTATCTGTAAATGAAGACATAG
CTAAGTTTAAGAAAAAAGTACACATTGTTGTTGGCAGTCCAGGTCGTCTAAAACATCTTA
TTGTAGGAAATCATATTAATTTATCTGATGTTCAACTCTTTGTGTTAGATGAATGTGATA
AACTGGTAGAAAAGCCTTTTCTGAATGATATAAACTATATATTTTCAGCTTTACCTAATC
ATAAACAAGTTATTATGAGTAGTGCCACTTATCCAGAACATTGCAAGGAAATCATTTGTA
AATTTGTAAAAAATGCTCAACACATTTGTCCAGATAGTAACAATATCTTATTAGGCATTA
CACAGAAAGTAACTATAGTGAAGTACAATAGAGATCG
(937 bp)

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