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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23338_g1_i3
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		HIV_Tat-specific_factor_1_homolog_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
Transcript
Level		FPKM:5.69 TPM:2.96
ORF EntryO_BomoMSG11559_3prime_partial:A_BomoMSG_c23338_g1_i3
Sequence
(Nucleotide)
CGTGTGCTCTTCCGATCTGAATGTGGATGAAATTAAAGATTTGACGTATGTTTATCTCTG
TAGAAATCAAGTTTTGTACCTGCAATACAGATAGCCATAATCATATGGTCATCATCAGGT
GTTGAATATCATGTAATATTTCCAAACACTTAACTGTACACATTCTACATCTAAAGTTGT
AACGTTCTAACGTAATAAATGCAAGAATGGCTAAACTAAATCCAAGAACGGGATTTGTGA
TCAAACTTTCCGAAGAGACAGTTCAAAAGTTAGCGGAAGAGGAAAAAGAAACAAAAGAAA
AATCTACATATAATCAGATAGAGGATACTACATCGGTAGAAGATATTAATAATGACAAAA
TTCAAAATGTTCAAGATGTGAAAACAACATCACAAACTTTAGATGTACCTACTTCCGATT
CCATAGAAAAATCTACTGTAGAAAGTACTCTGCAGAAAGAAAATTCATCACAAACTGAAA
AAACAGTTCTGAACATAACTGATGATAAGGGTGAAAATGATAAGGATAATACACTTGAAG
ATAATGAAAAAACAAAGAAACCCTCCAAATCTATTACTGATTCTAGTACTTGGGGTGAGT
ATGCATCATACATAACTTACAAAGATAATGAAGCTGTATATACTGACCCCTCATCAGGTC
AAGCTTACACTTGGAATAAAACCAGCAATGCTTGGGATGCTAAAGGTGATGAAGCACCTG
GTCGTGTTTACAGCTATGAAGATGACACTCATATATACACAGAGGCTGATGGTTCAAAAT
ATTTTTGGGATGAAACCAAGAAGGCTTGGATACCAAAAGTTGATGATGACTTTTTAGCTT
ATTATCAAATGTCTTATGGATTTATTGAAAATAAGAAAGATGATGATGAGAAAGAGAAAG
GTAGTGACAAGAAGAAGGAGTTGCAAAAAGAAGCTATGGCTGTCAAAAGGAAAAGTGAAC
CGCAGTGGTTTGAACCTACTGATGATAAAAACACCAAAGTTTATGTATCAAACTTACCTC
TAGACATGACTGAACAAGAATTTGTGGACTTAATGCAGAAGTGTGGTCTCGTTGAACGAG
ATCCAAGTAACCAAAAAATGAAAGTTAAATTATACATGGACAAAGAACAAAATTGTTTCA
AGGGTGATGCATTATGTACTTATATAAAAATAGAATCCGTAGATTTAGCATTAAAATTGT
TGGATGGCAGCGATTGTAAAGGCAATACCATTAAAGTGGAAAGAGCTCAATTTCAACTAA
AAGGGGAATACAATCCTGCCCTCAAACCTAAGAAAAGAAGAAAAAAAGAGCTGGAAAAAA
TTAAAAAAATGAAAGAAAAACTATTTGATTGGAGGCCAGAGAAGTTTATTGGTGAACGTT
CTAAACACGAAAGAGTAGTTATTGTTAAAAATTTATTCCACTCTAGTGATTTTGATAAAG
AGGTTCAGCTTATTCTGGACTATCAGCAAGATTTGAGGGAAGAATGTGGAAAATGTGGAG
ACGTTCGGAAAGTAGTGCTCTATGATCGCCATCCTGAAGGAGTGGCACAGATAACTATGA
AAGAGCCGGAACAAGCTGATGCTGTTGTTCAGCTGATCAACGGAAGATGGTTTGGCAAAA
GACAAATCACTGCAGAGATATGGGATGGCAAAACTAAGTACAAAATTGCTGAAACTGATG
CAGACATTAATCAGAGGTTAGATAAATGGGGTAAATTTTTGGAAGAAAAAGAAGATGATA
ATAAGGTAATTAAATTGCCTGTTGAAGAAAAAGACACAGATGAGCTTAAAGTTGAAGAGG
TTTCTATTGAAAAAGAAAATACTCAATACCTA
(1832 bp)

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