SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23282_g1_i4
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		uncharacterized_protein_LOC101744580_[Bombyx_mori]
Ontology
GO:0000182 F rDNA binding
GO:0000723 P telomere maintenance
GO:0000775 C chromosome, centromeric region
GO:0000780 C condensed chromosome, centromeric region
GO:0000781 C chromosome, telomeric region
GO:0000791 C euchromatin
GO:0000792 C heterochromatin
GO:0000793 C condensed chromosome
GO:0003682 F chromatin binding
GO:0003696 F satellite DNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0005703 C polytene chromosome puff
GO:0005704 C polytene chromosome band
GO:0005720 C heterochromatin
GO:0005721 C pericentric heterochromatin
GO:0006342 P heterochromatin assembly
GO:0006343 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0022008 P neurogenesis
GO:0030702 P pericentric heterochromatin assembly
GO:0031060 P regulation of histone methylation
GO:0031507 P heterochromatin assembly
GO:0033697 P obsolete positive regulation of extent of heterochromatin assembly
GO:0034773 P histone H4-K20 trimethylation
GO:0035012 C obsolete polytene chromosome, telomeric region
GO:0035064 F methylated histone binding
GO:0042393 F histone binding
GO:0042981 P regulation of apoptotic process
GO:0044026 P DNA hypermethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051276 P chromosome organization
GO:0090309 P positive regulation of DNA methylation-dependent heterochromatin assembly
GO:1900111 P positive regulation of histone H3-K9 dimethylation
Transcript
Level		FPKM:2.85 TPM:1.48
ORF EntryO_BomoMSG11417_3prime_partial:A_BomoMSG_c23282_g1_i4
Sequence
(Nucleotide)
GTGTGATTTGTAGCATTTCGCGTTGCATGTGAAGATTATTTTTGTGAAATTGTTTTGATT
TTAAAAAATGACATCTATGGAAGAGAGTGAAACTCCTGAAGAGGTGATACCTGGAAATCC
AGATGAACTTGCCAAAAATCCTACTGCACTTAAAGATGCTCATGAACAAATGGCAGCACT
AGATATTCTGGTCTGTGGGCAGTGTCACTCTGCATTCCATTTTGTAGAAGAGTTTAAAGA
ACATAAAGAAGGTACCAATTGTTCAGGAAAGTCCCCAGTAAGGGATAGTAATGAAAGTAA
GGCACAGGTGTGGGCATTCCTGTTATGGAAATGTTCTTCTGCTCGAGAAGGCTCCGCTGT
TAGCACAGACAACAGCTGGAAGCTGTATCAGCAGTGGTGCCGGATGCCAGAAGCACAACG
TAATGCCTGGATCACAGCTGGACAGAATGTACAGTCACTATCTAAATATGCACATGCTAA
AGTCATGGAGTTGAAAGTAGAGGACCAACAGGTACCTGTAACACCTGGCCATGAAATAAA
GAAACGAGGTAGACCAAAAAAAATACTCAAGCAGGATGACCTGGAAGCTGTACCATCCGG
AGAAGAAAGTGAAGAAACCAAAAGTCATTTAACACCGAAGATTACTCACAAAACGCCTCT
GGCAACAAATATAAAGTCAAAGGATCTAAACGACTCCGTGCGTAACGCCCAAGAGCGTGT
GCCTCCCGAGGAGCGCATCGCGCGGCGCACGGAGCGGCAGGGCGACCCAGCCGAGGCGGG
AGAGTACGTTGTCGAGAAAATACTCGCCAAACGGTTCAACCCTCGTCGCAAGCAATATGA
ATACCTGCTCAAGTGGGAGGGATATCCTCATGACCAAAATACATGGGAGCCGGTAGAGAA
TATGGAGACCTGTAAACATTTGCTAGAAGCATTTGAGAAGCAGTTAGCTCGTCAAAAAGA
GCTCAAGGCATTACGTGCACAACAACAACAGCATCCCGTACAAGTTGTGAAGCAGGTTAT
AAAGAAAACAGAGAGTCCAGTCACACCTTCAGGGCGCTTACAACGTACGAGCAAAGTTCG
TGCACTAGATCAAGTGAAGGCGTGGTGCGGTGTAGAGGATGGCGAACCGATGTCCAAGAA
AGTCAAGAGGGAGATGTCCAGTGAAGACGAAGACTTCTCGGATCTTGAATCAAAACATGA
GAAGAAGATAGTGAATGGACAATCTTCACCAAAGTCAACGTTAGACCCTGAGCTGGTAAA
ATCGCTCGGTCTGGGCGGGAAGGGTATGCCGAACATAAAGGGGGTTATTAAAGTTGACCC
TAAACATATGCCTAATCTTTCTACAGGAGTGTACATAATGTCCAAAAGCTCAGGGATAAT
GAAGATTGATTCTCCAGGGAAATTAGGACCGGGTCTTAATATTGACCAGGATGCTATTAG
AAAACAGATAATGGCTGCAAAACAGAAAGTGGAGGAAACCAAAAAAATTTCATCATCACC
CCGTCCACCAATACCGTCACAGATAAAGAAAACATTTACCTCGGGAGGTCAGCAAGTTAC
AGAAAAAACAATAATAACACCATCAGGACAAAAGATCATTCAGCGCACAATACAGCGACC
AGCTGGAATTAGTTCTGATAAGTCACCTGTAACTATCCTCAATAAGAAACTTGCTCAAGG
GGATAGCTTGCTACGTCGTGGTGGAAGCAGTCGGGGGCGGGGCCGCGGTGGTTACTCTAT
ATCCACAGCAGGTGGAAATATCGTTCGTATCAGAGACAAAGCACCTGTACCAGTATCATT
TGATTTTGAACAGTCAGATGCGTCGTCGGACACATCGGACGGCATCGAGGACCCGTTCCC
GCGCGACCTCGGGCCGCTGCCCCCGGACAGTCCGCCGCGGGAGCTGACGCTGTGTCCGCT
GACCGGGCGCCGCCTCGCGCGCGCCGAGGGCGAGCCCACGCCGCCGCCCACTCCGCCCCC
TGCGCCCCTCACTCCGCC
(1998 bp)

- SilkBase 1999-2023 -