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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23222_g1_i1
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		DNA-(apurinic_or_apyrimidinic_site)_lyase_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005813 C centrosome
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007568 P aging
GO:0008081 F phosphoric diester hydrolase activity
GO:0008311 F double-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0010243 P response to organonitrogen compound
GO:0014912 P negative regulation of smooth muscle cell migration
GO:0016491 F oxidoreductase activity
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
GO:0016829 F lyase activity
GO:0016890 F site-specific endodeoxyribonuclease activity, specific for altered base
GO:0031490 F chromatin DNA binding
GO:0032403 F protein-containing complex binding
GO:0042493 P response to xenobiotic stimulus
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0045454 P cell redox homeostasis
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051059 F NF-kappaB binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070301 P cellular response to hydrogen peroxide
GO:0071320 P cellular response to cAMP
GO:0071375 P cellular response to peptide hormone stimulus
GO:0071417 P cellular response to organonitrogen compound
GO:0080111 P DNA demethylation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
Transcript
Level		FPKM:15.83 TPM:8.23
ORF EntryO_BomoMSG11308_5prime_partial:A_BomoMSG_c23222_g1_i1
Sequence
(Nucleotide)
CGACATTTCCACCCCGACCAGACGGGCTCGTACACTTTCTGGACGTACATGATGAATTCC
CGTTCGAAGAACGTCGGATGGCGTTTGGATTACTTCATAGTTTCCGACAGACTGATTCCG
TCGGTCTGCGACAACGTCATCCGCGACAAGGTGTATGGCAGCGACCACTGTCCGATAGCG
CTCTTTCTAAATCTAACAACAGCCGAGAAACCGAAGGAATAAAGTCCTTGTGTACTTTGT
CCCGATGCCGAACTGCCCACCAGCCCGACCCGCCCAACTGCTCCCGACACTCATACGAGT
TATAAATATTGGCAAAAACTTGTGTCTAATCAAAAATTTTACTATAATATATTAAGTGTT
GCTTGTAAAAAAAACCCAGGAAATTCATTAATTTTCAATGCTTAATCGATTTGATTGCTG
CAGATAGGCAAGACGCCCCCAATTAGTGTTAGACCCACAATATGAGATGTGGTTATGCCG
CCGCGAACCTTGAATCTTGAACCGTTGAAGACATTGTAGGTTATAATAACGGTTGTCTAT
TCTTTAAACCGAAAAAGCGGATTGGTGCAGGTGTGCTTAAAAATTTCGAAAAATGTTAAA
AACATTAA
(608 bp)

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