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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c23127_g1_i5
Scaffold_idBomo_Chr7
NCBI non-redundant
(nr)		splicing_factor_arginine/serine-rich_6_isoform_X5_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0016607 C nuclear speck
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035062 C omega speckle
GO:0035327 C euchromatin
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:4.03 TPM:2.10
ORF EntryO_BomoMSG11142_complete:A_BomoMSG_c23127_g1_i5
Sequence
(Nucleotide)
AAACTCAAAAAAAAAAGTAGTGTTGGTACTGTTGGCTGGTAGCAGTGGTAGCACTGAATT
TGTACTATTTCCGGAATCAAGAAGCTGTTGTTGGCGTCTGAGCACGTTGTAGTTTATGCA
AATAGTTGGTTTATTATGGATTTTGATTTTGATATTGAGTGATAAAATCGTCGATTACTT
GCTAGTTCAACTTTGAATCATAGTTTATTATTGTTTATTGGAAAATGGTTGGATCACGAG
TGTATGTTGGTGGTCTCCCCTTTGGAGTAAGAGAGAGAGACTTGGAAAAGTTCTTCAAAG
GTTTTGGAAGAATCAGAGACATACTTATCAAGAATGGATATGGTTTTGTTGAATTTGAAG
ATTACAGAGATGCAGATGATGCTGTGTACGAGCTAAATGGAAAAGAACTATTGGGTGAAA
GGGTGGTGGTGGAGCCGGCGAGGGGCATCGATCGCAGCGCCGACCGGTACCGGCGCGGCG
ACCGGCACTACGAGCGCTCCGGCGGCGGCCGCTCGCGATACGAATACGGACCGCCAACGC
GCACCGAGTATCGACTTATCGTCGAGAATTTGTCTAGCCGCATTAGCTGGCAGAAGGTGG
CCAGTCCGGTCGATGTGCGTTGCGCTGTGTGATGTGGTCTCAGGCGATGTAGAGTTGCGC
CGCGTCGTCCGGCGCCCGCATGCGAGCAGCCCGCCAGGTAATGTCGGGGCTACACCAACC
GATGGACACAACCGACATCACAACACTTACATTTTAAGTATATCTTTTATTTTACTACAG
TTCACAATGTTCTATATTATAAAAACTATTGTGACTTTCAATTTTATTTACATGAATCGT
TTTGCGTTTTTCGTCTGCGCTGACTTGATGGTATTATTGCTTACATTGTCAAAGGCGGTT
ACGGAATGACAAGGCTGTACTGAACCAAGAAGATTTTCAAAGGAGAGACAGGATCAAAGA
ATGAATCTAAAGATTTGTTATGAAGTCAATCCAATATGAAACTAATTTCCGAAGTTGCGC
ATCGGACCAGGGTCAAATAGCGAACTGAAGAAGATGCTACTTTTAGATGTTTATATGGAG
AGTCCAAACAAGTCCAACCCAGAAGGAAGTGTCCACCATCCGAGGCTAGTGACTGTAGCT
GGTGCAGGAAGTGACTAGAGGCCATGTGATGACTGAATCTGACTCATGATGAATATTACC
TTTAAAAGGATGAAGATATCCAGGGAGGAATTCAGAGCCAAAACATAATAATGAGAATCG
AAAAGCCAAATAAAGGACATCGCACATATGAAAATGCGACATTTCTTAACATGTAAACAA
TAATACCTATTAGTAATCGCATACGAAAATACTGCATTACTTGCCTTTCATATTCATATC
CATTATGTTAGTTAATTTCAGGAATGTATTGTAAATCGTATACTATTCATAAGATTTTTC
GTATAAACAATAATGATGATATTTTATTTTAACCATCTTTCGGGGCTGAAAGTCTTGATG
ATACTATAATATTCTGATGAAGACCGAAGAAACAATTTATTCTTTTGATACAAAACAAAA
AACTAAATGAAGCCTTCATTTACAGGATTTGAAAGACTATATGCGTCAAGCTGGCGAAGT
GACTTACGCTGACGCCCATAAACAACACAGGAATGAAGGTGTGGTAGAATTTGCGACGCA
CTCGGACATGCGGGCCGCCATTGAGAAACTGGACGGTACGGAACTGAACGGACGGCGCGT
GCGACTCGTGGAGGATCGGAGGTCGTCGCGCCGGCGCACGCGCTCCTCGTCCAGCCGCTC
GCGCTCCCGCTCCCGGGACAGGAGGCGCTCGCGATCCAGATCACGCCGTTCATCTCGTTC
TAAATCTAGACAGAAGAGCAAGAGCCCTGCTGCTAAATCTCGCTCTAGATCGCGTTCCAA
TGGCCGTAACAAAGACGAGGAGGGTGGGGGTCGCGGACACCGCGCCGGCAGCCGCTCTCG
CTCCCGCTCCCGCTCGGAGCCCGCCCACGCCGACCGCAACGGGCGCCGCTCCGACGACCG
CTCCAAGTCCCGCGACATCAAAGCCGACTCCAAGGAGAGATCTCGGTCTCGCAGCAAGGA
AGCGTCCCCGAAGCGGGAGGAAGAGCGTCGTCCGACCAAGTCCCGGTCTAGGTCTCGGTC
TCGCTCCCGGTCCAGGTCCGTGTCCCGAGGCCGGTCCGTCTCGCGGGACCGATCCGGATC
CCGTTCTAGGTCCAGGTCTCCAAGACAAAACGGCGAAGCTCAGGACCGCGACGGAAGCAC
GGACCGCTCACCGCGTAGTGGTGATTAATATTAAACTTACAACGATAGCAATTAGACTTG
AAGATGAATACTTTTTTGATTTAATTGAAAGTTCCATATCGTGACTGCGATGTTTGCGTT
TACTAAACATTTCGTCTCGCATTAAAACTGTATAATCTCAAAACTT
(2446 bp)

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