SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c22995_g1_i1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		serine/arginine_repetitive_matrix_protein_2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0070742 F C2H2 zinc finger domain binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:21.31 TPM:11.09
ORF EntryO_BomoMSG10910_3prime_partial:A_BomoMSG_c22995_g1_i1
Sequence
(Nucleotide)
AAAATCAAAACCAAGCAAGATGGTCGTGTTCAATTCTTTTTAAACATAAACATATAATCT
AATAATATTGTATATAATACGAAATAATGTATAATGGGATCGGGTTGACGACGCCACGGG
GCTCCGGTACAAATGGCTACGTACAGAGAAATTGGGCCACGGTAAGAAAAACAAAAGACT
CCGTCAACTACCGGACTGAAGATGAGATCGCCAAGTTGGATTCGGCGTCAAACAAACAAC
CAAATAGAGAAATACTCGATCATGAGAGGAAAAGGAAGATTGAAGTCAAGTGTGCAGAGT
TGGAAGATAGCCTGGAAGAACAAGGGTTCCCGAAGGATGAGATAGCGGCGCGGATTGCTG
CGTTCAGAGCGAAAATCTCCGAGACCAGCAGCGGTGAGAAAGATGTTCCAAGGGACGAAT
TCGGGAGGGTAGCTGTCCGCGAGACGCACGCCGTTGCGGAGGCTCAGCAGGAGAAGAATG
CAAGATTACGGGACGCCTTCGGGATATCGCCGCGGTTCGTCGAGGGCTCGAGCCTGGACC
CGGAGCGAAGGGCGAAGGAACAGGCCGAGAGGTACCCGCTCGTGCGCACGCCGAGCCACG
AGAGGGAAGACCATGCCGCCAAGAAAAAGAAGAAACGAAGCGCATCGCCCGAACCAAAGA
AAATGAAGAAGAAAAAGTCGAAAAAGAACAAGAAAGAAAAGCACGAATCAAGCAAAAAGA
AGAAAAAGCGTTCGAAATCTTCTGACAGCGACAGTTCGAGCAGCTCCGAGGGCGCGGACT
CCGACTCCGCCACGTCGGACGACGAGAAGCAGAAGAAAAAGAAAAAGAAAAAAACCAGCA
AACGTCGCACCAGCACTCAACCGACCTCCCGTGATGTCTCGCCAGTGAAGAAGTCGAAGG
ATAAAAATCGCGATCGATCGATCGAGGCGCGGCGGGAACGTTCGACTGAGGACCGACGAG
GCGACGACCAGCACAGGAGGGACGACGCCCGGGACGGCAGGAACTTCAGGCGCGTCCAAC
GCAGTCGCTCCAGAGAATCCTCGCACGAGCCCAAACAGCGCTCCTACATCACTAAAGTGG
ACAACAGAAAGCGGGAACCGTCCCGGGAGAGGTCCAGAGAGAAATCAACTAAACCTAGGG
ACGAGAAACGATCGCGCCGCGAACGAGACCGCAGACACACTTCGGGCTCCGACGCGGAAC
AAGCGCCGCACAGAAACAGGGACGCGAAAACTAACAAGTCGCTTAGAGACAGTAGCGCGT
CGCCACCGCCTGACAAGAGGCGACGCACCAGCCCCGACCACAGGAGCACCGAGCGAACAG
ACAGGGACAGCAACAGGACTCGCAGAGACACTCCACTAAGAGAACACAAACGCGAGACCA
GACGAACTAACTCGCCAGACTACCAGAAGCCAAGACGCGAAGAGCCCCATTCAAAGAGAA
ACAAAGAAGACGCGAGACAAAGAAACAAAAGCGAAGACCGGACCGACGACAATCAACAGA
AACGCAGGGAAAAGGAAGTTCGCGACGAGCCTAGACGTAAGAAAAATAAGAGCCCGTCCA
GAGAACGCCGCGAGACGTCCCCGGAGACCAGGGACAAGTCACCGAAGTCTGCTAAACAAA
AAGAAAAACGTAAAGAAGCGGAGAAGACGTACAAAAAATCCAAACCGAGCAGACGATCTG
TTTCGTCCGGATCTGAATCCGATCGTTCTGCTAAACGTAATTCTGATAGAAAAACAAAAG
GCTACGAACGCTATTATAAAGAACGTACCATGTCACCCGCAAGAAACGAAAGGAAACAGG
ACTCGCCATCTCCCGATAAGAGAACACAGTCACCTCCTGCGAAAACAGACAGATATAAAT
ATCTGAAATCACCAGAGAGACCAAAGAGTCGATCGAGACAAAAATCTCCCTCAGCAGAAC
GAAGGTCGCGGCATCGAAGGTCCGCCAACAGATCTGAATCTCCTCTCCGCAAAAACTATG
GAAGGGACAGGCGAAAGAGTGACACCCCCAAGAAAAATAACAGGAAATCTATAGAGAAAC
GTGATCTTTCCCCTTCGAAAAACGAAAGTAGGCGAGACCGAAGCAGGAACGAGACCAGGA
CGTCTCGCGATGACAGCTCTCGATCCCGACAGAGAAGCAAGAGTTCATCCAGTCTTAGCT
ACTCGCCCGCGCGTCGCAGCCCAGAACGATATCGCGACATTATAGAAAAGTTACCAGAGA
AAGATAAACGGAAGTATATTAAATCACCTTCAGATCTACATCCAGGGAAAACGAAAAAAG
TTCAAAATTACAAGCCGAAGGTGTCTTGCATGAGAGATTCGTCGAGCGACGAACTGGACG
ATACCGTAGAACACTTCCTAACTTTGGACGAGAGGTCGCGGCAAGAGGAAATCGAATGCA
TGGACCTCAACAGGCTGAAAGCGAAATTAGCGCAGATGACGCGTGAGACGATAATGCGAA
GGAAGAACGAGGACTTAAACGGACCTTCCACGTCACAAACCTCACGCTCAGACTCAGCGC
CACACGAGGGCAGAAGGAACAGAGACGAGAGAGAAGGTGAGATCAGGGATAACATTGAAA
AAGAACGAGAAATCAGGGATCAGATCGAACGAGACAGAGACCAAAGCAAAAGGGAGAAAG
AAACGAGAGATAGAAATGAAAAAGAAAGGGAAATGAAAAAGAAATCCGAAAAAGATAAGG
AATTGAGAGATAAAGCGGAAAAGGAGAGAGAAGTGAAAGACAAATCCAAAAACACTGCTG
AAAGAAATGCGCGAGACAAGAAAGAAAAATCGCCGACATCGAGATCAAACAAGAGTCCGA
CTAGCGGAAACGTTTCTCCAAAAAGTCCACGAAAAGCTGAAAGCTCACCGCCTAGAAAGA
AACATGAAATTTCGTCGACCGTAAGAAAAGTCGAGAGCTCTCCGCGCGTAAAGAAAATTG
AAGGACCATCGGCTCTGAAGAAGAGTGAGAGTTCACCGGCCGTCAAAAAACACGAAAGCT
CGCCCGATCTCAACAAGAGTAAGCGGAGTTGGTCGCGCTCCACCCGCTCTCGCTCGCGCT
CCCGCTCCCGCTCGCGCTCGTCGCGTTCCCGCTCCCGATCATACTCGTCTTCAGGACGTT
CCCGCTCGAGCGGCTCGAGCTCGTACAGCAGCAGCAGGTCCTCGTCCAGGTCGTCGCGTA
GTTCCTCCAGGTCCACGCGCTCGTCCAGGACGCTGACGGGCGTGTACGCGGATTACCGTC
GATGGAGCGCGTCCCGCTCGCGGTCGCTGTCGATCCCGCGCCGCGCCGGCTCGCCCTCGT
TCCTCGACCGGCGCCGCATCACCAGCGCACCCGTTGTAGACCTAACTTACTCGTCCAACA
AATATAAATACAGAGATCG
(3379 bp)

- SilkBase 1999-2023 -