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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c22658_g1_i2
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_pre-mRNA-processing_factor_6_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:4.83 TPM:2.52
ORF EntryO_BomoMSG10395_internal:A_BomoMSG_c22658_g1_i2
Sequence
(Nucleotide)
TGTGGCTCATGGGCGCCAAGTCCAAGTGGCTCGCAGGCGACGTACCGGCGGCTCGGGGTA
TCCTGTCGCTGGCCTTCCAGGCCAATCCCAACTCTGAAGAGATCTGGTTGGCCGCCGTCA
AACTGGAGAGCGAGAACAAAGAGTACGACAGAGCGAGACGGCTGCTGGCTAAAGCTAGGG
CTTCAGCTCCCACACCGAGAGTGATGATCAAATCAGCGAAACTAGAATGGGCATTGAACA
ATCTGGACGTAGCCATAAAGTTACTGGACGAAGCGATCAAAGTGTTCGGGGACTACGCAA
AGCTTCACATGATGAAGGGACAGATTGAGGAACAAATGGCCAAGGACGAAGACGCTCACA
ACACATATAGTCAAGGGTTGAAAAAATGTCCAACGAGCGTCCCCATGTGGATCTTGCTGT
CGAGACTGGAAGAAAAACTGAAACACGTGACCAAAGCGAGGTCCGTGCTGGAGAAAGCCA
GGCTCCGGAATCCTAAAAATGCCGAACTGTGGTTAGAAAGTGTGCGATTGGAAAGACGAA
ACGGAAGCCCGGAAATAGCTAATGCCGTTATGGCGAAAGCTCTTCAAGAGTGCCCATCTG
CCGGTCGACTGTGGGCGGATGCTATCTTCATGGAATCGAGACCGCAGAGGAAGACTAAAA
GTGTTGATGCGTTGAAGAAATGCGAACACGACGCCCACGTGCTGCTGGCTGTCTCACAGT
TGTTCTGGACGGAGAGGAAACTAAACAAATGCAGGGAATGGTTCAATAGGACGGTAAAAA
TCGATCCCGACTTGGGGGACGCTTGGGCGTATTTCTATAAATTCGAGTTACTTCACGGCA
ACGAACAGCAACAGGA
(856 bp)

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