SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c12167_g1_i1
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		vacuolar_protein_sorting-associated_protein_16_homolog_[Bombyx_mori]
Ontology
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005884 C actin filament
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006914 P autophagy
GO:0007033 P vacuole organization
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0032889 P regulation of vacuole fusion, non-autophagic
GO:0033263 C CORVET complex
GO:0035542 P regulation of SNARE complex assembly
GO:0046718 P viral entry into host cell
GO:0055037 C recycling endosome
GO:0097352 P autophagosome maturation
Transcript
Level		FPKM:1.87 TPM:0.97
ORF Entry
Sequence
(Nucleotide)
GAAATAATTGTTTACCTACATATCTAGCATAAAGTGAATTTTCAATTAGTTCTGATTAAT
TCTACTACGATTAGAGTCTAAATAATGAAATATACAAATTCAGTTCATTCAAACTAGTGC
TGTTAGTAATAAAAATATGGTGTAGCTTGTAGTTGAAAGCCAAACCGCTTCGAACAACAA
TATTTCTATAAAAATATTGTACCTAACAGGAAAACTGAAAACATCTAATTAATTGACTTG
TTTGGCTACGAAGATAAAATGTCGGCTCTACTAACAGCTCATTGGTTCCAACTGGACACA
TATTATCGAAAATTTGATCTCTACACAATGAACTGGATGATGGACGAAGGTTTAGAGAAT
ATGATAGTTAGCGGTGCACCGTATGGTGGCCTAATGGCAGTAGTGAGAGACCGTAAACAA
TTTGTTCAAATAAAAACC
(438 bp)

- SilkBase 1999-2023 -