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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp60810_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		TAR_DNA_binding_protein_homolog_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001933 P negative regulation of protein phosphorylation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005726 C perichromatin fibrils
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010629 P negative regulation of gene expression
GO:0016607 C nuclear speck
GO:0030264 P nuclear fragmentation involved in apoptotic nuclear change
GO:0032024 P positive regulation of insulin secretion
GO:0034976 P response to endoplasmic reticulum stress
GO:0035061 C interchromatin granule
GO:0042802 F identical protein binding
GO:0043922 P negative regulation by host of viral transcription
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051726 P regulation of cell cycle
GO:0070935 P 3'-UTR-mediated mRNA stabilization
GO:0071765 P nuclear inner membrane organization
Transcript
Level		FPKM:30.41 TPM:24.02
ORF EntryO_BomoMG27539_5prime_partial:A_BomoMG_comp60810_c0_seq1
Sequence
(Nucleotide)
TGGCTAGCACGTACTCCGTCATACGTCACATACGTCACGAGTATTATAAGAATTTCTGGC
TTGATTTACAAAATAATATACTACTTATACAAGAATTAGGACTTAACCAGAGTCTCAAAG
CCGTGCGAGTAGATAAACGAGATGAGGAAGTGGAAGGTCAGCGTTGGTCGGTGAGCAAGA
TGACGGAGTACGTGCCGGTAAGCGAGGGCGAGCAAGACGAGCCCATTGAGCTGCCAACCG
AAGAAGACGGCTCGCTGCTACTGTCGACCGTGGCAGCGCAGTTCGCAGGTGCCAGCGGCC
TGAAGTACCGAGTGAACGGGAGACTACGCGGCGTACGCCTCGTCGACGAGCGCCTGTCAC
CACCGGCGGAGGGCTGGCCGGCCTACCGATATTGGTGTGCCTTCCCACGCGCGGAATCGC
CGCCGCCTCGACCACGATGCTCCGATCTTATAGTTCTCGGCTTACCATGGAAGACGACAG
AAGAAGCTGTACGAGATTACTTCTCCTCCTTTGGCGATTTGCTGATGGTTCAAGTAAAAC
GCGATACGCGCACCGGACTATCCAAAGGTTTTGGCTTCATCAAATTCGCCGAGTACGAAG
CTCAACTGCGTGCATTAGGCCGCCGACACATGATAGACGGGCGCTGGTGCGATGTTCGCA
TCCCGAACGGCAAGGACGGCTCGTCGACGGCTCATCGAAAGGTATTCGTCGGCCGTTGTA
CGGAGAATATTACAGCCGAAGATCTCAGAGAGTACTTCGGCTCCTTTGGTCAAGTGACAG
ATGTGTTTGTGCCGCGACCCTTTCGTGCATTCAGCTTTGTGACGTTTCTTGACCCAGAAG
TAGCAAGGTCCTTGTGTGGACAAGATCATATTATAAAAGGTGTGTCAGTAAACATTTCAA
CAGCATCACCAAAGCGCGAAAGGTCCACTACTGCAGCCAGTGGGCTCGGCTGGGGCCGTA
TGCTTGGCTGGCCAGCTGATGCATGGCCACTCCCGGCACCCCATCCCCTCGAGTCAAAGC
CCTACCTCAAATACGAGTAAACTGTGCCTCCTGTTCTCCACAAACCTACATTGTTAATAG
CTTTCAAATTTTATATGAAACAAATTGTGTAAATAATATATTATACCAAGTTAAAAAAA
(1139 bp)

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