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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp44374_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		DEAD_box_polypeptide_5_isoform_1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031047 P gene silencing by RNA
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050688 P regulation of defense response to virus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:149.07 TPM:117.77
ORF EntryO_BomoMG26904_complete:A_BomoMG_comp44374_c0_seq1
Sequence
(Nucleotide)
TTTTTTTTTTTAGTATTCTTAAATTATTTATTCATACAATGTAATTATACAATGAAATGT
AACAAGAGTGGAATGACGGCTTAACGCTCTAAATATTAATAAAATTCTACATGAATTTGA
CGACATTTATTCTACTTGGAAAATTTCAGAGTAAGAATGCACTATTTTGCAAATCTTGGG
TAGAATCACAATAAAAAAATATCACAGTTTTAACATAATATAAATAGTGTTACCTATAAA
ATGTTGGGTCGCTAGTGGACATTACAATAAATAAATTAAACTAGCCACAACTGTAATATC
CAAACAGGATCTACAAATCATAACATTTATCTATATTACGAGGATTCACCCTCTTAGAAA
TGCCAACAAAAATCTTATTTAATAGTCGTCAAATCGTTTGTAACCACTGCCCCCCCTTTG
GCTACTCTTGCCAAAATTGCTTCCGCGTTTAAAAGAGCCGCCACCACCTCGTCCACCTCC
GCCGAATCTGTTCCTGTTCCACCCGCCGCCACCACCACCGCAACGGTCGGCCATCGACTG
CAGTTGTGGGCTAATAATCTGATTAGCTTCTTGTAGAACAGATACCAAATCTTTGGCTTG
ACGGGAATTTGAAGGGGTAAAGAAAGCATATGATGTTCCTTTTGATTTTGAACGTCCAGT
TCTCCCAATACGATGGATGTAATCCTCCGACGAATTTGGATAATCAAAATTTATTACATA
TTTGATACCATCAACATCAAGCCCTCGAGCTGCAACATCAGTTGCTACAAGAATACTAGC
ACGACCTTCCTTGAACTGATACAGAACTTCATCTCTTTCTTGTTGAGTTTTATCGCCATG
CATGCAAACAGCTGGCCAGCCATATCTCCTTATGTTCCTTGATATGTTCTCAGCTTTTCT
CTTGGTTTCAACAAAAATTATTGTTTTCGCACCAGGTTCTTGACTTTGTCCAATTTCTTG
CAATAATACATTTAATTTATTTTCTTTTTCATGTTCTTGACAAATATCTACAATTTGAAG
AATGTTGTGATTTGCGGAAAGTTGTAATGATCCTATATTGATCTGAATGTAGTCTCCCAA
GTAATCCTCAGCAAGTTTCTTCACTTCTTTGGGCCAAGTAGCTGACCACATCAAAGTCTG
TCTGTCTGGGCGTATTTGCTCAATGATTTTTCTGATTTGTGGTTCAAATCCCATATCCAA
CATACGATCAGCCTCATCAAGAACTAAATATGTGCACCGCTGTAAGTTGGTTGTGCCCTT
TTCCAAGAAATCAATTAATCTACCTGGAGTAGCAATGACTATTTCTACTCCCCTCTCCAA
GTCCCGGGCTTGCTCTCTTTTAGGAGCACCACCAAACACACACGTGTTACGAACATAAGA
TGTGTGTCCAAAATCTGCAGCAACTTGCTGAATTTGTTGTGCTAACTCTCTGGTAGGCGC
CAAGACCAAAGCAATCGGACCATCACCTCTCCGAATAGGCGGTTGGTTGTTTATGTGCAC
AATGGCTGGCAAGATGTAGGCCAACGTTTTGCCGGAACCCGTTTGGGCTACGCCAACTAA
ATTCTTTCCAGACATAGCTATCGGCCAGCCTTGAGCTTGAATGGGCGTCGGTTCTTTGTA
ACCCATTGTCTTTACACCTTGTTGCACATAATCAGGAAAATTTGCTTCTTCAAAGTATTG
AATAGGATTATGAACCTCAACGCCACTTACAGTTACCTCGTGATTATTTCTGTACTCTTC
GACTTCATATGGTGATCTTTTGAGAACTGTAGGATGTGGATCATAAAAGTTTTTGTTGAA
AGGTTGGAGCGAAACAGAATCCCAATCTGGGCGACGCATGTTCTGACCTCCAGAGAATTC
TTTTTTCCCACCAAATCCTCCAGATCCTCCAAATCTATTGCCACCGTTGCCAAATCGAGA
AGAATTATCGCCGAATTTGTTGCCTCCTCCAAATTTGGAACCACCGTTTCCACGGCTATT
ATTCCAGTTACCAGACATGATTATTTTTCGGATTTAGTTGAAGATGTTTATTTAAACTAT
GGATTCTTTCTGACGCAGGGTCCACCTTGACCACTGCTGCGCGATGAAAG
(2090 bp)

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