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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp41109_c3_seq20
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_vacuolar_protein_sorting-associated_protein_16_homolog_[Plutella_xylostella]
Ontology
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006914 P autophagy
GO:0007033 P vacuole organization
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030424 C axon
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031902 C late endosome membrane
GO:0032889 P regulation of vacuole fusion, non-autophagic
GO:0035542 P regulation of SNARE complex assembly
GO:0043025 C neuronal cell body
GO:0051015 F actin filament binding
GO:0055037 C recycling endosome
GO:0097352 P autophagosome maturation
Transcript
Level		FPKM:1.53 TPM:1.20
ORF EntryO_BomoMG25241_complete:A_BomoMG_comp41109_c3_seq20
Sequence
(Nucleotide)
CCTCGACCGGGTACCCGTAAATGGATTTCCCAGCGTTAAAAAAAAGGGCGGTGGGACCTA
CCCGCGTGGGCTTACAGGATGCTTAACCACCAGTAAATGGTATTGCATTCTGAGAACGCG
GCCACCCAACCCACAGAGATATATTCTAAGTTTAAGTCGGCACCACGCAGCTAAAGGTGC
GAGGTGCTTTAGGGTGCGTTTTCATGATATACATTAAGTGATATTGAGTTTTGTGAATAT
AACTTATTCCGGGTCACAGCCACAGCGTGCAGTCGACGGAGACGGCAAACGAAAACGATC
ATTTCTTAATTTTCAACTGTTCTAGGAGTCCTGATATTTTGGCTTGATTGTCGAAGTCTT
GCATCGGGCATTTGTTTTGAACGAAATGTAAGCCGGCTTCGTCTTTCTGTTCGTATGCTA
CTTCGGCGGCCTCCGCGTAATACCCAGCTTTGACGTAGTATTTAATTTTGATCTCATCCC
TGCATCTCGGCAAGTACTTGAGTGCTTCGTCCGCCTTGTTGTACTTGAGACAGGCGTCGA
CAAACGGCTCGTACCCGACTGGAGATTTCTTTGATTTCGAAAACTTATCCAATTCCTCCC
AATTGGACTTCTCGGCTAGTGTTAGGATACGAAGCCACCAATATCTTCGATCGGGCATTT
TATATTCCGATCGCAGTTTGTCCGCCAATCTGACTTCTCCTTGGTCCAGAAGCTTTTTGA
CGGTATCGTGAAGCGACAGCCCCACGAAGCTCGTTCCGTACGTCTCCTGGAGACTGGACT
GTTGCTTGCACAGCTTCCGGGCGTCCTCGCATACAGATGCACCTAATTCGTTTTTGCCCT
TTTTGTAACATTCCCTGGCGGATATCAGCGAGGCCTCCGCGCTGCCCGGGTTGGTCTGCT
CGATGGCGTCACATATGTGAGTGGCGGCCTGACCCTGGAAGTCGTCCTCCTGAACGTAGA
CCAGGCGCAGGGCCTCGCGGTTGTGACTTGCGCAGTACTTGATGTACAGGGCGTGCGCTA
AAGGGAAACTGCGGATCGTGAGCTCAAAGTCATGTTTTCCCATTTTTTCCTTGAGATGCA
ACAGAACAACGTAGACCAAGTCCGTGTCGCCGCTGGCGGTCGCCTTCAGCAGCGCAGTCG
GACCTTCGCCGAGTGACAATAGTAATGGAACTTGTAATTTGCTATGTGCCTCGTACTCCA
GGATTTTTATAGCGAGAGCTTTCCTTCCTTTTTCGGCAGCTTTCATGGCTATCGTTGTGT
ACGATATACCAGGGACATTCCGTAGCTTCTCGCCTATCTCCCTTGCGGCACTCTCGTTGT
CCAAGTGAGGCTGAGTTACCTTGTAACAAGCCCAATGGGACAGGACTCTCGTGCGTCCAT
CCTTCAGTTGCAGGTAGGAAGCGATGTGTCCGGCCAAACAGTGCAGTCGGCGCCATATGA
GCCGGTCAAGAAGTATTCGTTCGCCCAAATTACGCATTTGCATAGACGTCAAAGGTATAG
CCACTTTAGGATCTCTGACGGCGTTCAGAACTCTCAACCAGCGACACGTCTTGACGTAGA
GCTCCGTGATGACGGGGTCCATCAGGAAGCATTTCCCGAACTGCGCGGCCCGGATCAACA
TTTTCTGCACGTCCGGACTGAACTCGAAGGCGGCTGCCTCGATGCAGTCCGCGACGGCGG
CGGACAGGTCGGGCTTCACCAGCCGGATGTACTCGTCAGCTCGGTGACTGCGTTTCTGAA
ATTGCTTAGAAGCTTCAACTAGGTACGAGCCGGGCGCCGTGCTATTGATCCGGAATATTT
TCTCAACAACAAAAGGCACCTTTTGCACGAGTTCATGGGTCATTTCTGATACAATACGTA
TGCAGTCCATCTCCTGAATTAAGTGGAAGGGTCCATCGTATGGATACGCAACACTATTGC
CTTTAGTACCGTACATGCACAAAGTGTCGTCCCAGTGTGCGGCCACAGCTTGGGAACCGC
ACCACATGAATTCTTTGGGTTGTTTAATATAATCCGTATCTAACTCGCAGTAATTATTCC
TCAAATCGGAAGATCCAATCCATAGGAAACCAGAGTCGGTAAAGAACGCAATGTGCTTGC
CATTCTGTGAAGCCACGATAGATAGGATCTGTGTGTAGGGGTTCTTGATTTCTGGACGCA
AAAGAATGGCCCTGGATTCACCTAGTTGGCATTTATAAATCTCTTTATCTCGACACACTA
TAAAACTAGAGTTTACAGCGCACCAGCATGATATCGGTTCATTGGCTCTTGGTATATCAG
GAACCGGTCGAGCTTTTGGTTCAGAAACATTACTCACAAGGAACATTCTATTAGTTGTAG
TGATAACAGCTAGTCCTATACCATGAGGATTTGGAAACAATTGAGCTTTACAAACTTTTG
TATCTCTGACTTCTTGGCCCATATTGAAAGTTTTCTGGTAAGCTCCAAACATGTCATAAA
TAAGGACATCACCGCTTTCTTGAATACAAAGTAGCTGTTCCCCATCAGACCATCCGATAT
GTAGTAGGACACCACTGTTCCACAATATCTTTGATATAACATTTCCTGAGCAGTTGTAGA
TTGTTATAACAGGTTTAGTGGTGGTTTTTATTTGAACAAATTGTTTACGGTCTCTCACTA
CTGCCATTGGGCCACCATACGGTGCACCGCTAACTATCATATTCTCTAAACCTTCGTCCA
TCATCCAGTTCATTGTGTAGAGATCAAATTTTCTGTTTTTAATGTAAATTTATTAAGTA
(2759 bp)

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