SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp41024_c0_seq5
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		retroelement_polyprotein_[Glyptapanteles_flavicoxis]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:1.76 TPM:1.39
ORF EntryO_BomoMG23768_5prime_partial:A_BomoMG_comp41024_c0_seq5
Sequence
(Nucleotide)
ATGTTTTTTTTTTTTTTTTTTTACTTGCCTTTTGTTTAGGCGTATGAGGGTTTTGATGCT
GTGGTGCTGAGCGGTCTCATACGCCGTGGTCCACAGGGGCTCTAAAGGATGTAGGAAGGA
CGATGCTGTGGCCTAGGCCTTATTTATTTTGACCGTGGTCCACAGGGGCTCTGAAATTGG
TTCAATGAAGGAAAATAGGATAGGGGTAATGTACAGGCTTACTTTTAATAATGGTCGACC
CGTCAACAAAGACATAGGCCAACGGCTGGATCTTACTGCTGATGTTGATACTGGCTTTCT
CATAAATTGGTAAACATTTTAAGTAACTATCAGGATAGCAGTAAGAAATATAAAACTAAC
CATTAAGCATCCAAGGCCTGGGCAGCTCGCGAGGTAGACGGCAGGGGCTGGGGCCGAGAT
GTGGCATCTGTTTCAGTCTCGTCGGCCGGCACGCTCGCCGGTTGTCGCTCGGGGTCCTCT
ACACTGTCCGTCGACACGGTGTCCTGCTCGCCAGGCTGGGGCGCTCGGCGCAACTGGTCG
TGGGCGACTTTACGAGGGCGCCCTCTGCCGGTCACTCGCTTGATGATGTACCGATCGTTG
TCCAGGATTCTGCATACTTCATACGGCTCACTGTATTTGAGGTCGAGGGATGTCTGGTTA
CGAGTATTGTTCTTGACGAGTACGTAGTCGCCTCGTTGAAATGGGCGCAATTTCGCCTTG
CCTCTGTCGAAGCGTTGCTTGTTGTATTGCGCCGCATCAATCATTTTCTGTCGTACGTGT
TGCTCGAGCAGATCAAAATCTATGCATTCGTTCTCAATATTCACCAACCTTAGTAACTCT
GGCGGTATGCAATGTTGTCGGCGGGTCAGGAGAGTGAGCGGAGCTACTCCTGTCACTCGA
TGTGGCGTGCAGTTGAAAGCGAGCTGTAAAGCTTCCAGCGCCGTCTGCCAGTCTTGAGTA
CTGTAGTTTTTGATCATGGTAAGGGCATTTTTCAATGTGCCCATGACCCTTTCGACCTGT
CCGTTTGCTCGGCTTGTTCCTGGCGCAGTTGAATGCACGTCAATCCCTATGCGGTCAGTG
TAGACTTTGAACTCGCCGAGAAACTCCCGACCGCCATCAACCACCACTTGTACCGGGGTG
CCAAACAGGTGAATGACACGCTTGAGTGCCGCGAGTGTACTGCTCGGGCTCTTGTCATTG
GAATAGCTCAGTAATATGTATTTCGTGAATGCGTCAATAGCAACAATTACGTACTCATCT
TGTCCTTCGGAGTTTCTCGTGCCCAATTTTCCTGTGATGTCCATATGAATGACCTGGAAC
GCTGCCGTGGGTTTCTGGATCGGATGGAGCTGCGCTTGTATAGAACCAGATGGTCCTTTC
GAGGTTCTACATATAACACAATGGTCTACAAAACGTCTAACAGCCGAGTTCATCTTGTCA
AACCAGTACGTTTCTCGTAGCTTCTGCAGAGTTTTCTCCCATCCTGGGTGCTGCAGTGTC
ACGTGGAAGGAGTTTATCAAGCTCCACTGGAAAGACTTAGGCACTACAATTGGTTTATGT
ATGCCGAGTATAGGATCTGTGAGCATTTTCTTAAGTATGCCATCTTCCATGACATAGCCT
TCGATGGAATCGCCAGATGTTATACTCTCCATCATTGGGCGTAGCACGTCATCGCGGTGC
TGCTCAATCTGCAGCCATTCCATATCTCGAGTCATAACGTTAACTGACATCTCGCTGCAA
GGGTTTCTACTGAAAAAGTCTGCGTGCTGTAATCGCTCACCTTTCCTATACTCCACCTCG
AATTCGTAGTTTTGCAAAAACGCCCACCACCGATGGATACGCGGAAGCAAGTCCTTTTTG
TTTTTGGAGGCCTTGAGAGCATTACAGTCGGTTATTACCTTGAATTTTCGGCCGTAGAGG
TAATGCCGAAAATGCTTAATTGCTCTTACGACCGCCAACGTTTCAAGTTCGTAAGAGTGG
TAGCGGCTCTCGGCGTCGGTGGTGCGCTGGCTCATGTACGCGACTGGATGTTGGCGACCC
GCGAATGTCTGCACTAACACTGCCCCGTAGCCGATGCTGCTGGCGTCCGTGTAGAGTTCG
ATGGGTGCGTCTTCCTGGAATAGCGTAAGGGTAGGCGCAGTAGACAGATGTTTGACAATA
TAATCCCTAGCTTCGTCATGCCTTTCGTTCCATTCCCATGTCGTATCGTTCTTAGTGAGT
TCATATAAAGGCGCCATAACTCGCGAGAAGTTGGGAATGAAACGTCTGAAATATCCAGCC
AGGCCATTGAATTGTCTAACTTGTTTGACAGTTTTCGGGATTGGTGCCTTCGTTAAAGCC
TCCACCTTTCTTGGGCTAGGGCTGACCTGCCCGTCGGCAATTATATTGCCCAAGTACTCG
ATGGAGCGTTTAAAGAAGGCGGTTTTATCAACGTTAATAGAAAAGCCAGCTTCTTGTAGA
GCAATCAATATGCGTTCAATATGGGATAAGCCCTGATCAAAATCTTTACACTTTGAGAGC
ACATCATCGACATAGACCTGGCACACTTGGTCTGGTGAGCTCGTGAGATGAGCGAGAGCC
CTATTAATGCAGCGCTGGTAGACTGACACCGCGTTGCAAAGTCCAAATGGCATAGTTAGG
TATTCATATAAACCATCGGGAGTTACAAAAGCAGTCTTTTCAATTGATCCCTCCGAAATA
GGTATCTGATGAAACCCAGCTGCCATGTCAATTGTGGTGAAATAAATACCCCCGGCCAGT
TGGTCTATTTGGTCTGAGATTATCGGTAAGGGATAATGGTCCCTGACGGTATTCCTATTT
AACTCTCGGTAGTCTACACACATACGATCTTTGCCGTTTTTCTTTTTAACTATAATTATT
GGGCTTGCAAAAGGAGATTTACTTTCCCGAATTATTTTATGCTCAAGCAATTCGTTAACG
ATATCGCGAACTTTTTCCCGTTCAACTGGACTAAGCCGATAGGGCCTACGCTCCACTGTC
TTACTTTCGTCCTTTAATCGAATCTCTAGCTCACCCGTATTAACTCGCGTATGCGGGTAG
CCATGAATAAACAAGTGTTCGAACTTGTTCAGCAATATTTTTAACTCGCTAATCTGATTG
TCATTGGTTAAGTCACAATCTAATTTGCCAAATTTTGGGCTTTGAGATCGCATGTGGTAA
ATGATCGGTTGATGAACCAGCATTGCACCTCGTGAATTTACAACAACGCTTAGGTTCGTA
TTTTCTATCAAATTAATGCCTATCAAAATATCAGAACTCACTTCAATATCGGAAACGACG
TGAAACTCTAGTTCTACGCGCAAGTTGTCGACTATGCAAACTGTTGTTAATGTTGAAAGC
GAGACAACCGTAAATTGACCGAGAGCTTTCAAATAGCTAACCCTATCAACGCGTTTTCCC
GGCAACTTTGCAGCTACAGATTCACGAATGACTGAACATTCGGCTCCACTATCAAAAATT
GCATTAATTTTGAAACCTCCTACAACAACTGGCATCGCATTTAATTTTGACGTCCCCACA
CAATTGACATTAGAAACAACTGCACGTTCTCGCTTGTAACACGTTTGATAAGTATGACCC
AACCTTGAACAAAACGTACATGTCGGTCTACCAACACCTGGAGGAGTAGTTTTACCATCC
TGTTGTCGCGGCTGAGGGCCTTCAGGTTTGTCGCGGTATCGGCAATCACGCGTATCGTGA
CCCGACCTTTTACAGATTTGGCAAAAGCCCGGTGTCTTATCAAAACGTGGGCGCTTTGCG
ACACTCTGATGCGGTATCGATGCATTGGGATGAGGACGTTTAACACTTTTTATAGATGAG
GCCACTGAAATAAGTTCTGGGACAGATGTAGCTCGCGCATTTAACAATTCGATTCTCAGG
CGCTCATCCCCAATGCAACCGATAACAGCCTCAACCGCGTCATCATTCGACAACTTATCT
TTAGTAATACGTCTCCATAAAACCCAAGCTT
(3991 bp)

- SilkBase 1999-2023 -