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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp41011_c0_seq7
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein_isoform_X4_[Papilio_machaon]
Ontology
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:7.17 TPM:5.66
ORF EntryO_BomoMG23577_internal:A_BomoMG_comp41011_c0_seq7
Sequence
(Nucleotide)
TGACATTGGCGGTGGCGGTGTCGTTTCCGTAACGGCTGCGAGCTATGCAATAGTATATGC
CGGCATCTTCCACTTCGATGTTGTTAAAGACCAGAACTGGGCCACGGATTTCGACACGTC
TAGAAGGCTCCCTGTCGTATCTCCAAGTGACGTCTAGAATTTCATCTCCTTCGACGAGAC
ACTCGACCGTGAGCGACTGACCAGGTCGGACCGTTTGGTTGGCCGGCCTCAACGTTATCT
TAGGTCGGGTCACGACTTGGAGATTAGTGTAGTTCGCCTTCACCACCTCTCCGGTGTAGC
GGTTGTACAAACTACAAACGTACAAGCCGGAGTCGCTCTTGGATACACCACGGATGATCA
AACGTGAATCAACTTGGTACGCATTTCTTTGCAGTGACTGTCTGTCTCCTCGGTCCCAGC
GTGCGTTGAAGCCCTCGGAGCTGTTGCAGAAGATGGTTATTTCTGGTTCGTTTTCATAAG
CGATCAACGTGTCTGATCTCCCGGTCGGGTTGTTCGGGTTGTAGTCAACGGGGAACTCGT
CATCGCCGCTTCCACCAAATTCGTATTCGACTCCAATGTCTCCGCGGCTGACGCGTATCG
CGAACGGCTCCTCGATGGTGCCGGCCGCAGAAGTGGCCGTGCAAATGTAGTCGCCGTCGT
CGCGCTCAGCTATCGACGGTATCTTCAATGCTGCTAAGCTGGGTGTGGGCCGCACCAGCT
CGCGGAGATCAGCGCTTGTCTTTATGGACACCATTGGTAGGGGATACCCGTCGGCTCTGC
ATTCGACTGTCACGGAACTACCGAGAGGTGCCTCTAGGAAGCTCGCCGGCGTGATGGTGA
TGACCGGCGGCGATCTCACTTTGATGACGGAACGAGCCGTGGCTGTACCGGCCACGTTCG
TAGCCGTGCAGAAGTATTCGCCTTCGTCGTTCACGTCGACGTGGTCAAACTTGAGCGTAT
TTTGCGGACGGATGTGGACGTACGAGGACAGCGGTCTACTTCCACCTCGACTCCACATGA
CGTCAGGCTCAGGGACTCCACCAAGAACTCTGCAGATGAGTTCGTATTCTGTGCCCAGAG
TGACTGCTCTCTCGCCTTGGGGCCAGATGTCCACTTGCGGAGGGTCACGTCTTTCGATCT
CGACGTAGACGTATGAGCTGGCTATGGTGGCGCCGTTAACGATTCCCTCGCACAGATAGT
ATCCTTGATCGTCCTCTTTGGCGTTGTTGATTATGAGAGTGTTGCCGCGTTGGCTTGTTT
CGCTTCCGAATTCTCCGCCGTGCTTGCTCCATTTGATGGTAGGTAGAATTGTTCCGTCAG
GATTACAGTCGATCTTTCCGCTTCCACCAGCCGGTACCTTCAAGCTGTCGACCGAAATGC
TGATGTTCGACTCTTTGGCGGGGTCAGGACTGTATGTCGGTATGATTGTTATGATAATCG
ATTGCGGCGAGACATTCGACGATGAGCTCTGGCAGACATAGATGCCATCGTTCTCGGGTC
GAGCGTATTCGATGTACAATACCCCGTTATCGGACCGCACGTTTGCCACGAACGGAGCAT
TGTCTTGCCTGATCCACTCAATGGAGCCGGCCGGAACGCCTTGTGTGCCAGTACAGACAG
CCCTAGAACTTTGGCCCTCGTCAATTGAGAGAGATGTCGGAGACACTGTTAGCTTCTCCT
GAGATGGCCAAGATGGTTTTGCACGTACATTGATCGTGACTTTAGTAACTTCTGTACTGA
CTGCGTTCGAAGCGATACACCTGTATTCTCCAGAGTCCTCTTGGCGTGCACTTTCAATTA
TCAAGAGGTCATCGAACGATTCAGCGGACGCCGGCAAAGGTCTTCTAGAGTTCCTCTGCC
ATGAGATAGAAGGAGCTGGGTTTCCTGTTGCCGTGCATTCTAGTTCGATCCTATCACCTT
CATAGTAGTCAGTTGTGATGGGACGAATCGATACCGTGGGCGGGGTCATATCATTACCGG
GCACTATAAGAGTGACGACATCTTGAGCCGTTGAGTATCCGTCGCTTGTCTGACAGATGT
ACTGGCCGCTATCGGATGTCTGAAGGTTAGTGAGGAGCAAGACACCACTGTTTTCGTCGA
CCTGCGACCTTCCTTGAGGCAAGTAGCCATCAGCCTTGGACCACGCGATGCGGAGTCTGT
TCGTAATGCGACTCTGAGCCTGGCAAGTGTAGTTGACACTGCTACCGACGTGCAGGTCCC
TTATGTTCGAGGGCTCAATGATTCTCACGAACACCGTTACTTCGGGCGGCGGTTGATTAG
GCGGTGTAGTCACCGAGGGCTCACCGGCGATGGTAGAACAATCAGAGCCGGTGTAAGGGG
GGCGGCAGTTACATATAGTCTGTCCGTAAGCGTCGAGTTGACAGTCGTGGCCGTTACATG
AGCACTGTTGGCACCGACCAGACACGTCCTTGTAGTAACCAGACGAGCAACTCTCGCAGC
TGGTGCCAGTGTATCCGGCTGGACACATGCAGATTTCGACTCCCTTTGCAACAGGCAAAT
CTTGTTCGTACATGATAGTGGCAGTGTCCATGGACACGTCAGCGATAGATGTCGACAGTA
CGTTGGGATCGAGAGTAGCACGAACAAGCACTCGCTTCAGGTCCTTCAGGACATTCATGA
AGGTGTTTCGAGTGACCGGCGTGGCCGTGTTCAATAGGAACCAGTTGTCTTCGCTCAAAA
TCACCTGGTAATTAAGAGGCACGCCGGATCGGATCGGAGTCGGGTTGGACCAGTACACCG
AAGCGTCTTTGCCGACAAGAACAACGTCGACGCCACTCTGTGAGACCGCATCGTCGTTGT
TGCTTCGGAACTCTTGTCTTATCGACAGCGAACCACCGTATGACAGTACTCTGTTACCAG
GGAAGATGGGCAACGACCAATACAGTTCGTTTTCGGGTGGGTACGAGAATATGTACATGA
GCTCGCTTTTATCGGGAACTGGTACGAAATGTTCGTTGTATATTTTTTCTGCGTTTAAGT
CGGTGAGGCTGTAGCCGCCGTTGTTTTCGCCGAAAACTGGTGCGGCCATCGGTATTCTAC
TGTAGTGGACGCCCTCGTGACATTCGCTGGTGACGCCGGAACAATAACACGAGAGACATC
CCTGAGGGTTGTTTCGATCCAGCCCGTAGGTTCCAGGTCTGCAGGTGTCACAGTAATCGC
CTTCGACGTTCTGCTTGCAAGAACAGGTACCAGTCTCGTCACATGGTACTTCGACGCCGT
CAGGATTGCATCTGCAAGGTTGCTGGGTGCTGATGAAGTTATCGGATTCAACGCAGTTGC
CGTAGCCGTCTCTGTCGTATCCAGGCTTGCAGAGTTCGCACTGGGGACCATCCGTGTTAT
CCTTGCAGTCGTAACAGACCCCTGTCTTTGGATTACACATATTCGAATGACCGTTACAGT
TGCAAGGTATGCATTCTTTCAAGTATATAGTTCGATCACCCCTAGTGTAACCAGGAGCGC
AGGTTTCACAAGATGTCCCAGTATAAGCTGGTGGACAAACACATTGTTCGACGTGTAGAG
CGGCCGGTCCCTCCCCATTAGGATCAGCCTTATCGATACTAGCACTAATCGGAATGGCCA
TTGGTGAGTCTTGGGAATACGTAGCCTTTATAAGAATGGCTTTAACATCAACTAAAGCCA
CTAAGAAGTGCTCTCGAGGTATTTCTATGCCGTCAAACCTTTTCCAACCGGTTTCTAGAA
GGTGTATCGAAACGTTTAGGGTTCCGTCGTATGATGGAACGAAGTTGCCAGTGTAATGGA
ATGTAGGGTTCGTGTTACTGATGAGCTGTACGTCCGGAGCGCTGTTTAGTGATATCGGAA
CGTTATCCAAAGTGTACCTCAAGTAACCACCGTAGGCCGTCACCAAGTCACCGGTGAAAC
CGTTTGGTAAGCTCCAGTAGTAAACGTTGTCCCGGACTGCCGGTATCGGTACATCTATAC
TGCCGCTGTAGATCCGAGGTCTCATTTCAGTTTCAACCGGCACACTGTACCGTACAGCCT
GGAGTGCTCTACCAGCTGAACTGTTGTAAATCCTGACTTGGTTCACAATGTTGGGCACGT
TGAATTGAACGGCAGTGGTTGTACGTCTTAGGTTGCTGCTTGTACATTGCTGGGTCACGC
CCATGCAGAAGCAGAGAGCGCATCCGTGACTGAAGTCTTCAGACAAATAGAATGAATCGT
TCTTGCACTGGTCACAATGACGTCCTTGTACGTTGACCTTGCACGCACACTCGTCAGGGA
ATCGAACCTGCTTTGTACCGGCGGGGTTGCATTTCTTGGTAGCTTTAGGCTTACACGAGT
CTCCGGGCATGAGAGGATTTCCTTCGTAGTTAGACGAACAGATATTACAGTTGCTGCCTT
CGTAGCCCGGTCGGCAATTGCAGAGAACAGTGCCGTCAGGTCCCAGTGCGCAAGTGGAGG
CGAAGTTGTTTTCCCTGTTGGTCAATGGGCAAGGGCAAGGCTTGCAGGCATATCCGCTAC
TTGGGTCTCCGTAAGTACCTGGCGGGCAGGTCTCGCGGACGCAAGTACCCAACCATTCCC
CAGATTGATCACGGGTATAGCCAACAGCGCATTTCTCGCATGAAAGTCCTTCGTATCCAG
GCGGGCAAGTACACTCTTCAACCAGACTCGCAGCACCGAGTCCAACATTGATGTGCTGCG
CGGATTCCATTGCGAAGTTTGTGATGTTCACGCCCGCATTGTGCAGATCAGCGCGTAGGA
GTATCATTTCAACGTTATCCAATGTCATCATGATGGTCGATCTCTGCGCTGGCGCTTGAA
CGCCGTTTTCGTCCAGAATCAGCCAGTTCTCGGGAGTCAAACGAGCTTCGATGTTGATAG
TTTTAGTCGTCTCGCCGCGGTAGTAATGGAACAGAGTGAAGTATTTCCCCTTGATGATTA
TGGTTGGTGCAGTGTCATCTGAGCCATATCCGGATCCGTGAGGCGAGATGGTGTATTTGA
TGTGACCACCGTATGAAGTTAACTGGTTACCGTTGTAGGTTTCTGGTAAGGTCACGTATG
GATGAGCATCTTTGAACCAGCCCATGTCTCCGGGGACTATTCTGGTCACAGTAGCTCCGT
TCCTCAAAGGTTGATAGAAGTATTCGTTGTTCATCGGGGCGCCGATACTGATGTCGCCTC
TGGCCTGATGAGTGACAGTGACGAATCTGGTGCCGCCTTCTCCAAGAGGAGTCGGCATGT
TGTACGTAAACAGATCCGCGCTGCGACACTGCGTGGACTCGCCGAAGCAGAAGCACTGGA
TGCATTCGCTTTGTGAACGCGCATCGCTATTGAAATATCCAACGGGGCAAGGATCGGTTC
TATTCACGTGTACGATTGCGTCCGGTGTCGCGAATGTCGTAGCCTTATTATTGATGGCCT
CGCACGAATACGCACCGCTATGTTGGGGCTGCATGTTTGGACATGTCAAAACTCCGATAC
CGTTGTCACTGGTAAAGGTGCATTGAGGTGGAACATGTCCCCAGTTGAGACGCCACGAGA
CTAGTGGAACAGGTACACCAACGGCCTCACATCTTAGAGTCAACGAGTCGCCCGGATTCA
ATCTCACGTATGAAGGTTGCGGGGGTTTCGTGATATATACTTGAGCGCATCCGATTTCAT
CAGAGCCATCAACGCAGTCAGATTGTCCGTCACAGTGGAAGCTCTTCGGAATACATTGGT
TGTTAGAAGCACATGAGAATTCTACCGCCAAGCAAGGGCTTCCAGGAGTTGGGGTTCCAC
AGTTAAGTTCATCAGAACCATCGCCGCAGTCGTCCTCGGAGTCACAACGCCAGGTCTTAA
GAATGCACTTGTGGTTCGCGCAAACAAACTCGTTCGGTTCGCACTGGCCACTGGCTCCGC
AGCCATCTTCGTCTGAATGATCAGCGCAGTCGAAAACAGAGTTGCAAATAGCCGATTTTG
GTATGCACTGCCCGTTACCGCAAGTGGCTTCATGTGGCTTACAAACACCGAACACTGGCC
GCACGGTCACAGGGCTCGTCTCCACTTCCAAAGTAACTCGAACTTCCGCACCAGGCTGTC
TCAGATAAGATGGTGCCTGACATATGTATACACCACTATCGGATGGGGTAACACCAAACA
GTTCCAGTCGTCCTTTTCTTTCCTGGTAGTTTGGCCTCATCGGCCTACCACCTTCTCGGA
TCCATCTCACGGGTGCACGACGAGGGCCTTCATCACGGCACTGAAGCACTACATCACCAC
CGTATCTGACAGATTCCTGGTCTTGCGGATATGTTTTGATATTTAACGGAATGGGACCTC
TGTCTCCTCTTTGACTACCAGATCCATATTGCCCCTCACCCGTCTCATAAACGCTATTGC
CACTTTCAGGACGATAGGGCCGGTTTTCTGGTTGATTTGAATTGCCTTGACCCGAAGCTC
CTGGACCAACATCTTGGCTTCCAGGTTGACGTCTGTCGTCTGTTCCACTTACGCCCCGCC
CATAGGGATCATATTCACCACCGGATTGGCCGCCATAGGGATCTCTGTTGTCTGGTTGCC
TTACTGATTCGGGGTTGTATGGTATTCCACCTCCAAGACTGATGTCTTGGCTTCCAGATT
GACCGTATGGAGGACGTCTATCATCTGGACTACCAGCACCCCGGCCATAAGGATCATATT
CACCACCAGACTGGCCACCATAAGGATCTTCTCTGTTATTTGGTTGACTTCCTGATTCGG
GATTGTATGGGCTTCCACCTCCTGGACTTACATCTTGACTTCCAGGTTGAGTATACGGTG
GACGTCTATCGTCTGGTCCACCAGCACCCTGGCCATAAGGATTATACTCACCGCCAGGTT
GGCCGCCAGAGGGATCTTCTCTATTATCCGGTTGGTTTTCTGGTTCAGGATTGTATGGGC
TTCCACCTCCAGGACTGATGTCTTGATTTCCAGGTTGACT
(6940 bp)

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