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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp41011_c0_seq5
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X4_[Bombyx_mori]
Ontology
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:5.15 TPM:4.07
ORF EntryO_BomoMG23573_internal:A_BomoMG_comp41011_c0_seq5
Sequence
(Nucleotide)
AACGACACCGCCACCGCCAATGTCATCGTAACCGGAGCACGCGACGCAAATTCTGCTTCG
CTGGTGTACATCGATCAGCCACGCAGAAAGTTCAGGGTTTCGGAGAACGTCGAAGTTATC
TGTAAGGGAAGATCTCGAGATGTCACCTTTAAGTGGGAGCGTCCCGACACCAACTTGTAC
CTGGTTACTAATCCGTTCGGAGGCGGTTCTCGGCTGCTGATAAACAGCGTCCAAGAGTCC
GACGCCGGCGTATATCGCTGCATCGGTACAGATCCATTCGGCATCTCCTCGTACGACGAT
TTCGTTTTGGAGATCGAACCAGGTTCTGGCAACGCCGTCTATCCCGGCAACAGAGACCTG
CCCGTCACCCATTACTCAGCTCGGCTTCGCGAGGCCGTCGACATGCCCTGCAACCACGAC
CTAAACGAGCCAGTCATTATCGAATGGAAACGAGAATATTCGCCGCTTCCCGCTGAAGTT
CGAAGCAATCAGCCAATCCTACACTTGGAAAGCGTGACAGAAGCGGATGCCGGCATCTAC
GTCTGCCGCGTCAGCAACCAAGAAGTAACAGTTACAGCGAAGGCGATCCTTAGGGTGATC
GGTGTGGTTCCACTCTTCAAAGGCAAGAGTTGGTTATCACTTCCACCTCTGAAAGACGCC
TACAGACAATTCGACATTGAAGTCTACTTCAAACCCACCGATCTGAACGGCCTGATCCTG
TACAACAGCCAAAATCAGGGTAGAACCGGTGACTACATCGGTCTAAGGTTATTGGATGGA
GTACCAGAGTTCATATTCGACGCTGGTGCCGAACCTGTCATCGTCAAAGGCGATAGACCA
TTGCAATTGAACGTCTGGCATTCAATAAGAGTCAGCAGGACCGATTCGAAGGTGACAATG
GACGTCGACGATACAGGACCGTTCATAACTGATTCGGAAGAGCCTTGGTCGGCCGTGCTG
GAACTCAACCAGCCAATGTACATTGGAGGAGTTCCTGATATTGACCAACTACCAGCTGGA
CTTGCAGGATCCGATGGGTTCATCGGATGCGTGAGCACTCTGATCCTCGGCCACGATGAG
AAGAATATCATGCTCGACAGCTTGGAACAATACGGCGTCGACGAATGTCGGTCTTGCACT
CCCAACCTTTGCGTCAATGACGGAATCTGTCAGGAGGCGCGTAATGAACGCGGCTACATG
TGCATCTGCGCTCCTGGCTTCGCCGGCTGGAATTGCGAGAGAACCGGGGAAGCTTGCAGA
GCCGGCCTATGTGGACCTGGGAAATGCACCGAAACAGTGGACGGTTACAGGTGTGCTTGT
CCCATGTCTCACACAGGCAAGAACTGCGAGACGAAGCAACTGATCGCGTACCCAGCTTTC
ACGGGGAGCGCATTCCTAGCTATCAACGCCCCGCCGCCGTCCCGTTCCATGAAGATGTCG
CTAAAGATCAGGGCAGCCACTCCAGTGACAGACGGCATCATCATGTACTGCGCCGAGTCG
TCGCGAGGATACGGCGGCTTCACCTCACTGACCGTTCGAAATGGAAGACTTGAGTTCCGT
TACGACCTTGGATCCGGAAGCACTCCCGTGGTGCTTACAAGTGACAGGCCATTGCCCGCG
AACCAATGGATCGACATTCAGATCGCCCGCCTC
(1653 bp)

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