SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp41011_c0_seq3
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X2_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0001958 P endochondral ossification
GO:0002020 F protease binding
GO:0002062 P chondrocyte differentiation
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0007420 P brain development
GO:0008022 F protein C-terminus binding
GO:0008104 P protein localization
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0046872 F metal ion binding
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048738 P cardiac muscle tissue development
GO:0060351 P cartilage development involved in endochondral bone morphogenesis
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:12.37 TPM:9.77
ORF EntryO_BomoMG23568_5prime_partial:A_BomoMG_comp41011_c0_seq3
Sequence
(Nucleotide)
TTTTTTGACAATAATTTTCATTTCTTAATGGTTAATTTGCATTTGTTCACTTAGCGGATA
CATAAAGATAAAATTCAATATAGACAGGTTCGTTTAAAACGTTCATTTTGAAATTTCATA
GATTACGAATACAAGATTCTTGATAAACGACATTATTCAGTACATTCACGATTATTTTAG
TATTAAAAAATTATTAAAACGGTTTTTATATACGAGTAGAACACGTGAAGGAAAAAAACA
AAACGAAATTGAAAACATTAAATGCCATCGCGATAACTAGTCGTGTTAATTAATCGTAAG
CAACGTAACATGTTTGTTAAAAAAAAAAACATTACATAGCTCTAAATAAAAGCGAAATGC
AACTACCTAAAGAATAAAAGCGAAACAAAATGGCAGTGCTCTAAAAAAGAAAAAATAGGT
AAAAAACAAATTCCTTTCAAACACGTTTGGCACATTACAAATCTTATCACTGGGTGCATT
GAAATTATACGTAAATTCATAATTTGGAATTAAACTGAACAAACAGAAACAACTTAATAA
ACAAGCCGAAATGAAAACAATGATAAAGTACTTCTTTAAACAAAATAAAAAATAGAATAT
TTTCAATTATTCAAGCTCCTAGCTACATTATTATATTATTTAGTTTTTAAATTTCCTTTT
CAATTCTTATGGCACCAAATCCGCTCCTCATCCGAGCACCCCGCAACTCGACGCAGCCAT
TACGAAGGTCCAACCACGTTAAATTGATTATAAGTAACACTTAATTTAATAAAAAATTAA
TAGACTACATAATAGACGTATTGTCGTGATCGAATCAATCTTAATACTAAATACAACGGT
AATATATAATGTCAATTATTTCTCTATATACTAAACCACAACGAATATTTATTTTTAAAT
GACAACCGAGGACCTATTATCGAACTTGTATACTAAACTTTGAAGATAACTCAACTATTG
CTATCGTAGTAAGTTGATAGTGATCTGACGATCGACCAATCGTAAATTAAGATAATAGAT
CCTCTAATTGCGTAATCATGAGATTATAATATTTAAAATATACGATGCATTCCAGTTTTA
TGAAAGCGTAGAGATTTTTTACTTAATTATTTCGTAGTTTTCGTTTCGATGAACTCAAAT
CAGGAGTCTCTGCATAGCTGCGTGTTTCGACCAGCCACAGCGGTGTCTCGCAAATTCAAT
CCTCGGTGGCTGTCCGTTGTCTCAACATTCTCAATGCAACCGATGAAGCCTGGATATCCG
TGGATGTTCAACCAGCTTGGTATTCCACCGATGTATATGTTGGAGTCAGCGTTCATGACG
TTGGAGATACCGGTGGCCGGCGCGCTCTTGTCAACTCCGTCGACGGAGAGCCAGGCGTGT
CCGTCCTCGTGCAGACGAGCGGCGACCTGGTGCCTCTCGCCGTCGTTAATAGGAACATCG
ACAACTATGGAAGAAAGACCACCGCCCAAGTCCCATTCGAGTACGACGAAACCTCTTTCA
ATTCTCAATAAGAAGTAATCGCCTTCGTTAGGCGGAGCTTGTCCTTCCCTCTGGTAGGCC
AGTACTCCGTCGTTTGTGGTGTGCACAGCGAGGGCGATGACAGCGGGGTTCGAGGCCAGT
TCATCATAGCGAAGCAAACTGGCCGGCAACTCTACATACCCGTTGCCGTTGAAGCCCACG
CTCTGGCCTAATTCGAGAGGCATCTGACACGAGGCTCCGGCATAACCCAAGGGGCAGTCG
CAGGTGTGGTTCATCCAAGAGTTGCGATCTGGTTTGCAGGTTCCTCCGTTGCGACACGGG
TGCAGAGAGCAAGGGTTTACCGGCGGAGGTGGCGACATCAGGTAGGATGCGATGCGCGTC
TCGCAGTACGATCCCGTATAGCCGGGTGGGCATATGCAATTGGTGGATTCAGTCGAACAG
GAACCTCCGTTTTCGCATTGGCAGGACTCCGACGCCTGAATATCGCCGCGGTCGTACGTG
TTGCACTCTTGAATGTTCGACGACTTAATCGATGAGTTTATGTCGACGGCGTTGCTATTC
AACACGACATCCTTAATGCATCCGCTGAAGCCGCCGCTGACGCCGGCGTTAGGGTTCACT
ACCACGGTGGAATCGTCGACTCCGCCCACGAACATCGGAGTCTCGAACCGGAGGCTTTCA
GCCGGTCTATCCAAACGTCTCTCGAAGCTGCGTACTAAGTTGATCTTCATGGAGACGGAA
TCCGCGAGGCGGGCGATCTGAATGTCGATC
(2250 bp)

- SilkBase 1999-2023 -