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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40942_c6_seq2
Scaffold_idBomo_Scaf002
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_RNF126-B_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000209 P protein polyubiquitination
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0071629 P cytoplasm protein quality control by the ubiquitin-proteasome system
Transcript
Level		FPKM:23.86 TPM:18.85
ORF EntryO_BomoMG22768_complete:A_BomoMG_comp40942_c6_seq2
Sequence
(Nucleotide)
AAATATTGTCTTTTTAAATCATTCATTTAATTTTTTTTCATTGATGACAGCCGCAACGTA
GAACCTTTCTTTTAAAGTCTAGTTTCTCTTATAATGAATAATATCCCATATTTATGTTAA
TTGCTGTATAACTAACTGTTTAAGATACTTGTTACTCTGCAGAGCTGAGGTATCAGTTAA
TGTATATGTTATTAAATAATAAACAGCAAAATTCAATTAATAAATTTTGTATTTTGTTTC
ATTTTATTATTACAAATATGATTATTGCTTTTTGTACGCATCAATACTTCATTACGATGG
TGTTCTCAAACCGCATTTCAAAAAATAAAATATTTACATAACCATGTATTAGAGAAATTA
AAATAATCATTAAAATTTTCATAAAGCTAACGCTTAATGTTCAGATATTTTAAAATTTTA
TGTATTAATATTTATTTATTTATTTTACACAATCCATAATAACAATACTTTACAAAACAC
AAACAAAAATTATATACTAGAGTCAAAGTTTCAACCGTTTCTTTAATACATTTACAATCC
ATGTTACTTCAGCATTAAAGGCCCTAACTTACGATGCATATTTACATAATTTACATGACA
AAAAGATTACTAAAAATAAAAACAATTGAACCATGACTCTTCTACATACAATTTTATTTA
TTACGTGAAACGCGTGTTTACGAAATCACAAACAATTCAATAATTTAAGCTCAGCTTGAA
AATCTCACAATTTTTATTTATTAGCTTACACGGGTGACAAGCTCAGGACCCACCTGATGG
TAAGTGGTTACCAGAAGCCATAGATATTACAACGTAAACGCCGCCAACCAACTTTAGATA
TGAGGTCTAATTCTCAATTGTGCTGCATAACACTTTCTCAAACCTTCAAATCGGAATACA
TTACTGCTTCACAGCAGAATTAGGCAGATCAGTAATATCAGCCCAGGCGGGCTTACATTA
CGCACTACCACCAGTAAAACATTAACATTAATTCACTATACAAGATATAGATCGTTTAGA
TCTGTCACAGTCATAAAAAAATATTTAGCACACAATCTTAACACAACAAGTCCACGTCAG
TTATATTCAACCCCAACTATTACATTACATTAAACTAGTTACATTTAATATAGTATAACA
ATTTCATTAACTATTCTATTTATAACATTTTTATTGACACAATTTCGATAATCACAATTG
ACTGACGTGGAAAACCTCAAAATGTCGATTTCAACAAACCTGTATCAAATCGACACAAGT
TATAAACTCATTAGTTATGTGCACTGTGAGATTTTCACACCGAGAGTTGTCCCACACTAC
GCCACACATATAGTAGTGTCAATAACGTCACAGATGAAAGGCACGATTCCCAACATTCAC
AGGATCCACTACGGCAAACACTAGAGATCAGCTCGGCGTCACCATGAGCACTCAACGACT
AGTTCACACCGACTCACACTCGCGCACAGTACGTCTCATCGCGTTCGCCGCATCGGCATC
GACAGTTCACGTGACAATCGCGTCGTTTTCGATCATAACAATACATATCTTCTGCGGCAC
GAACGACGCCACGGCCGAGCCTGCAGTTAGTCGTAGTCGATGTCCATGTTGTACCGGTCC
GAGCCGAGCGACGACGACGAGGTGTCGGGCCAGCCGGAGCCCGACGAGCCCGAGTCGAAG
CCCGAGAGCGTCACGTGCGCGCCCGTCGCCTGCATCATCTGCTGCAGCGCCGCCGCGAAA
CCAGACCGAGCATTGATTGAAGCTATTGACGGAGTACTACTGGCCGTAGACGTGGGCGGT
TGCGTGGGCGGTAGCGGCGGTTGCTGGGTCGTGGCGGTGGCTGTGGTGTCTGTGGTGGTG
CTTGTGGTATTGGTGATGGCTTCAGTATCGGCAGGCGGAGGATCTGCTGGGAGCAGCGAG
CGCCGACAGATGGGACAGGTGGCGTGTAGCTGCAGCCACGGGGAGATACACGACGAGTGG
AACAGATGCTCACATTCTAACCGCGATACTGTCTCGCCTGTTTCAAAATTTTCCCAGCAC
ACTGAACAAGCAGTCCCTTTAGCAGCATGATCCTCCGTGAGTATCTCCTGTGGTAATGCG
GCTAGCTGATCCCGTGGTAGAGGAGGAGGCCCTGAGTTCTCCAACTGGCCTAGAAGTTGT
GTTACTACTGCGTCTAAGCCTTCTCCTCCAAAAACATAGTCTCCAGGTGCTCCGACAAGT
ACAAATGGTGCACCAGCAGTTGTAGCACCAGTGCCCGGCCTCCCGGCTCCCATCATCCAG
AGTAACTGTTCGAGGATTGTATCTCTTCTACCTGTGTTTCGGTACCGACCTCCCGTCATC
AGGAATGCTAAATCGTTAAGCATTGGTGGTGGTGCCTGGCGATCATCGTCCAAGTTGCTC
ATATCTGCATCGTCAAAATCACCATCCGCTTCACTCTCCAATTGCTCTATAAAACCACTA
GCACAATATGGGCATGTATAATCCTGCAAAACATCTTCAAATTCTATATCACACCTGTGG
CAGAAAAACCGTAGTGTTGGTCTTCGTTCTACCATTGCGTCAGCCATGTTAAATTAATTA
ATACAACTGCACCAATAAATACTTATTATTTAAACTCAATTCCTAAAGATTGTGCTTTAA
ATTTTCAACAAAAATTTAACAATCGCCATTTTTT
(2674 bp)

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