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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40911_c0_seq1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:9.53 TPM:7.53
ORF EntryO_BomoMG22309_internal:A_BomoMG_comp40911_c0_seq1
Sequence
(Nucleotide)
CAGGTAGCGCGCGCGGGCGGCCTGCGCAGGCCCCACACAAGCAGTCGCGTGTGTTCTTCA
GCGTCGTCTATGGCCGAGCAACACATCACACCGTCGTCGCACTCTGCACTCACGAGAGAG
TCCAGCGGGTCTTCTCCTAGCAGGGTGGTGGGCGGTCGGTGGTTGCGTCGAGTTCGTCGA
GCAAGCCACGGCCGTCGAAACAGACGCTACCTGACGTCGCCTCTGCCACGCTCTACAAGC
CGACAGTCCTCTGGTCGCGGATCTGACGTAGATTCCCACGTTGAACTGCGAAGAAGCTCA
CGGCTCATCAACTCACTGCCTCGATCTGACTATTCAGTTACAGAGCGTTGGTCATACGGC
ACCGACGTATACGAAACACGTTGCGATACCTTACATCATAAGAGTGGAGATTCCAAGTCT
TCGAGTGCACATACGAAACGTAAACATTCATCCTCGCATGACAGAAAAAAGAAAACCAAA
TCGAGTAACAGCACGGAAGAGTGCGTCGCGTATTGCACACGCTCACGGACTGCTCTTAAA
ACGACCGAGAGTGCTTGTGAGCAAATCCCGAACTGTTTATCGCCAATTCCGACTAATCAA
AGCTCCACAGCGACTTCAGTACAACCAAACAGCTCTGAAGGTGGCTTGCTGCCACTAGAC
GAAAGAGATTTCGCGTATTCCCCATTCAGCTCGTCAACAGTCACCGATCTGCTTGATTCT
GATTATTCAGTGTACAGCCCCACGACCAGTAATCGGAAAGGCAAGAAACGAAAACGATCG
CATCACCGATCTCTGTCCGGCAGGAAGAGTAGTTACCTGATCGACGACTACAAGAAAAGA
GTTAAAATAGAGCCATCAGATTCAAGCGATACTGTTAGCAGCAAAACTTTTAGAAACGAG
CCAGAAAAATTTGACAATACTACACCGCAAACTTCTTGTACGTATTTATTGCGAAACAGA
CATCACCGTGACCTCGGGCCGCCTACCTCAACGGTCGTCAGTGACAACACAGCGGTTTCA
TCGACCTGCGACACTGCTCATAATCAACCCGCCACTGAACAAAACAGTACTGCCGAAGGT
AGAGTCATCTCGCCTCCGCCCTACAAAGACCTCCAAGAAGCGAGTTCATCGAAAGCACAG
AACGCTGGGAGTAAACTGCTGATTGTACCACGTGACCTGCCATATCTACGTCAAACTAAC
GCTCGAAGGAGTATCGCAGCTGCGACGGGGGCTACTCTGGGAGCTTGCTTGACGCGGGGA
GCCTCAGGCAATCAGCGCCAGAGACAGGATACGACTTCTAAAAGACAGGTAGCGAGCAGC
GAGGGCGCGGGCGGCAGCAGCGCGGCGGGGCGGCGGGCGCGGGCTCGCGATATGCCGCAG
CCGCAGCCGGCCTCTACTCGAAAAGAAAAACGAGGCAAAACCAGTCTGGGTTCCTGTGCC
AGTACTGGTGCTGCCACTAGCCGCTCCCACGCCCAGCCTCTAACCACGGGTGCCATAGCA
TCCACGTCCACCACACCACCTGCTCAAGCTGCAGCTGTCTCGATGCCTGACAATGCTGCA
AGTGACGTCAAGCCTAAAGTGGGTGGCATGACGTCAGCGGAGGAGTGTGGGGGCGCGGGC
GGGGCGGGGCTGGGCGGCGCGGCGACGCTGGCCGAGGAGTCGTCGTCCGAGGAGGGCGAG
GTGGGCCGGCTGCAGGCGCTGCTAGAGGCGCGCGGCCTCCCGCCGCACCTGCTCGGCGCG
CTCGGGCCTCGCATGCAGCACCTCCTGCACCGGACAGTCACCGCTAACTCGGCGGCTTCT
AAAGCAGCTCAACTGCTCGCTGGCCTCCAGGCAACCGGCGACGAAGGCCAACAGCTTCAA
GCCGTCATAGAAATGTGCCAACTTCTCGTTATGGGCAACGAGGACACGCTCGCCGGCTTC
CCGGTCCGACAAGTCGTTCCCGCTCTCGTTAACCTGCTCGCTGCCGAACATAACTTTGAC
ATGATGAACCACGCGTGCCGCGCGCTGACGTACATGCTGGAGGCGCTGCCCCGCAGCAGC
GGCGCCGTGGCGCTGGCCGTGCCCGCCTTCCTCGACAAGCTGCAGGCCATCACGTGCATG
GACGTCGCCGAGCAGAGCCTCACCGCGCTCGACATGCTGTCCCGCAGACACGCCAAAGCC
ATCCTGCAAGCGCGAGGTGTATCGGCCTGCCTGACCTACCTGGACTTCTTCTCCATAAAC
GCGCAACGTGCCGCGCTCTCCATCACCGCTAATTGTTGCCAAAACCTCACTGCAGATGAA
TTTCACCTTGTCCGAGAATCTCTACAATTGCTTGCTAATAGACTAACTCAACAAGACAAA
AAGTCAGTGGAGTGCGTTTGTCTCGCATTCTCGCGGCTCGTGGACAGCTTCCAGCACGAC
CCGGCACGCTTGCAGGAAATCGCCACTCCGGAATTACTTACTAATCTACAACAACTTTTG
GTGGTGCAGCCGCCACTGATATCGGGCGGGACGTTCATCATGGTGCTGCGGCTGCTGTGG
CTCATGTGCGGCGCCTGCCCGCAGCTCGCGCTCGCGCTGCACCAGCGGTCCATCGCCGAC
ACGCTGCTCTGTCTGCTCACCGGCTCCACGCTACATCAGGAGCAAGTGGAGCTGATACCG
CGCCTGCCGCAAGAGCTGTA
(2660 bp)

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