SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40884_c2_seq13
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		PREDICTED:_chondroitin_sulfate_synthase_1_[Bombyx_mori]
Ontology
GO:0002063 P chondrocyte development
GO:0005576 C extracellular region
GO:0005794 C Golgi apparatus
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0009954 P proximal/distal pattern formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0030279 P negative regulation of ossification
GO:0031667 P response to nutrient levels
GO:0032580 C Golgi cisterna membrane
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
GO:0051216 P cartilage development
GO:0051923 P sulfation
GO:0060349 P bone morphogenesis
Transcript
Level		FPKM:0.04 TPM:0.03
ORF EntryO_BomoMG22050_5prime_partial:A_BomoMG_comp40884_c2_seq13
Sequence
(Nucleotide)
GGTCATAAAATCACTTAAAAAAATTTCTATATGAATCTTTTCTCAATTATGACGTAATAT
CGGCTGACGTATGCAGATGGCGTGCGAGTAAACACGTTGAGGTACCGTTACCAAGTGAAT
CCCTCGTTATTTTATATAAGTAGCGTCACGTGTCGCGGCTTACACTTAAACTCGTAAAGT
TATCTTGCTGCGGTCCTCGGGCTGCGTGATCAGGCGTCCGGCTGTATCGCCGACAACGCG
CGACTGTTCGACTGTATTTTAAATTAAAAATATCTTCAGGTCGTTTAGTTAGACCCTCCT
CCTCCTCGCGTCGTTTCCTCACTGCTGAGGGTCGTGACCATTATAATTCGACATGATTTT
ACTCCTTGTGATGTCCCGCCAGCGCCTCCGATCATTGGCCGCATGAAGGGCGTCATAAGA
ATATCAACAGTGCTAATTTTCAACAGGCATAGCTTCGGCCTTCAATATTTCCTAAGCATT
TATATAAATCGCCTTGCTGATTTGAAATAGCTTTAAATTTATGTTTCTATACAAAAGCAT
ATAAAAAGATAATTACGAACCCGTCACTTATATATACATTTTAACTGTAAACAACTGATC
ATATTTACATGTGAAGTATATTTTACACAACAAGCGGAGCGGACAATATCCGTGACCAAC
CAGCTGGGGATGTATTGGAAAATTCGCGTCTTGTCGAATTCAAACAGCCTAATGAACAAA
CTTGAACGTTTGACCGGACTGTTTTTATATTGACGCCTTCACGAAACATCGAAGAACACA
TGATTCGTTGTAAGCTAGGACTGCGGAGACGCCGGGCGGAGGCGTGTCAACAGCACAGGG
GGCAAAGCGCCCGTTGGAGGAAAAAATATCCGTTTTTATTTACTTTAATTTAATTCTTAT
ACAACACAATTGAAACTTCAAAATAAACAGTAACGAGACGTTCATTAATAAGGCCATAAA
AGTTATATTTGTGTGTTTCAAAGCGAGTTAAAATTTCAGAAAGAACAGGATGAAAAATTT
TAAGATTCCATTGAAATTTGATTTTATTAATTCAGGAAGTCCCACCGGTCTCGTATTGAA
AGGAGTTCGAATAAACGTATCCACCGGTAATAAAAAAATATAATAAATAAATAGGAGTGA
TAAAAAATTAGAAATTGGTTTTACTAGATAAAGCATTTTGTTTCACGAATTTTGCTAGAT
TTTTTTAGAAATATGTTTTTTTTAAAATAATTCTATACCATCGAACGTGTGAGGTGAGTC
TTGTCACCCCCTTCCCTCTACGACATAACAGATTATATTAAAAACGTAATAAAATTCCAA
AAGTTTTTAACATAATTTTCAAAGTGAATTAAATTAGCTCATTCAGTTATTTTCTCCAAA
CTCAGAGGTCTACTTGTAAAACCGAATTTATAAAAAGTTCACAGGATTTGTCAAAATTCG
TTTTGATGTCTATATTACAAAAAGAAGCCCTCATAAACAAAACTTACATTCGTGAATTCC
AGAAATAACCAAAACATATTACAAATTTGCATTTCATGAAGAAAAAAAAACAGCTGTCAT
AGAATAAGGCACATGAATAACAATTAATTGACGCTGTGACTTAGTAAATATTTATAGAGA
AATAAATTCCTAGCGAGTCATTATGAATTAGGATATTTTACAGTAACTCTAACAGCACTA
TACTTAAAGATACATAGTTATATAAAGGTCCAGAATTCCTGACGAAATAATAGTTGTAAC
TTTGATGTATTTAGAAATCCAATTATCAAAAAGTCAACGTGAAAGTTTATGGCCTCTGCT
ACGGCTATTATTTCAACTGAAAAACGATTTTGATTACATAATTGCTTGTTTTGTTTTGAG
TTTTGAATGGCATACCTGTCTAACTAGCTTACGTATGATGTGGTATCCGATTTGCTAGTA
AACTAGGATCCCATTTATATAGCACACAAAGAGTCCCCTCAAAACTATTATAAATACCTA
AGTTTGACTGCACCTAACCTAAGCGACCCTGTACTACCTGGCACCTTTCTCGTTCTTTTC
CTTAGGTTTCTCTTCCACCACTTCCGCTTCCGCTTCCGGTTTATCTTGTGGCGGCCACAG
GACATCAGGGTGGTTTAGCATATAATACGCCATGTGCTTTTCACTGCCGTAAGTCGATGC
CTTCGTTCCCAGACACATCTTGAACTGGCTCTTCTCTAAATTTTTATCACAGTCAACCGA
ATGGAATATATGGACTAGAGTCTCGTCAGCTATCCTGTATACCGTTAAATTTGATTTAAT
TAGCGTTTCAAACAGCTGCACGTCTTCTAGACCCCAACCCTTAATGTTCAAATCGAATCC
CCCTATCCGTTCGAAGTCACGTTTATAAATAGCTAAAATACCAAAACCGTACTGCCTGAA
ATAGCCCGTATCATCAGTTATTTCCCGGCTGTACTTCAAATTCGCCAATTCTCTGTCCGT
TCTCACTGTTTCTTCGTCATCAATAAACTTCTCCAATTCAGTGTCCACAAACAGAGTTTC
GCCTTTAACTTTATTATAATCATCACCGTTCACTACATCTGGATTGTACTCACTAAACAC
TATTGGGAAATAAACTTGGTTATATTTTATTGTGTTGATTCTTATTCGACGAAGGCTCTC
GTGGTTGAACATCATGTCCACGTCAATGAAGAAGACAAGGTCGTCGCTATCGCAGAGCTT
GAGTCCCTCGGTCAAGGCGGCTCCCCGTGAAAACATATTCGACCCCATTTTAACTATTTG
GATGTCTTTCCCGTACATCTCGATATAATAATTAATTAGTAACTCTGTGTTTCTATAATC
CAATGGATGTTTGCTATCTAAATAAGCTACGACAATTAGAGAGGCAGCTTGACTGCTTTT
TAAAACTATATCTTCGTAGTTCTTCATGAATCTACCGAATGTCTCTTGTCTACCAGATAG
GGGCAGAACGAAGTGTATTTTTCTGTCATACACCGGGTACTCTTCAGAATCATCACTATT
CCACTTCAACACCTTGGGTAAGTTGTTCTGGATCTTCTGAAGACCAGTTTCGAGAGCTTC
CTTGACTTTTAATTTACCGAAGTCCAAAAAGCTGCTCTGTTGAGCACTGGACTCGTCAAA
GTCCTCGTAGTCGTTCGGATATAATCCATTCTCAGTCTTTTCTAGTATGGCTGGATCTTC
AAATGGAGGCGGATCTCCCATTGGTAACTCTCTTATCTCCATACCTGTAAATGACTGCTG
CAAATAAGCATGTCGTCTAACTGCCGCTGTCATTTTCCTTCCTCTGTATCTCCTGTACTT
CAACAGCAGATCCAAGATGTGATCGGCCCCGTGCACCGGCTGGAGCCTGGTGTATCCGTA
CAGAAGCTCGTTGAAGTCAATCACACGTCCTCGTTGACGAGACGGTGCATTAATAATCTC
CATAACTTCTCTGATAACATCATCCATAGCTTCTTTCAGGGGTAGCTCCACTCGTCTTTT
CGGGTTTGAGTGGTAGGCGGAGTACAGGCTCTTGCTGATGAAGTCGAATATGACGATATC
GTCTAGATTGGAGGGCTTGTACCGATTCATGTCTATCGGGGCACCTAATATTTTATTATC
CCCCAAGTATCCTGGCTCCCCAATCTTGGCCGGGAACAGCGGGACGTCTCCGGGTAAGAC
AAAGTCATCGACCTCGTCCCGGGGAATAGAGAGCTCCCGAAGCGCCGAGGAGATGTCCCG
GTGGAGATCCAGGGAACGTTCGCGAAGTTCTTGGATACGAAAGTTCTTGAAATATGAATG
TATTCTGTACATCTGGCGATGGTCTTTCACCGGATGCAAGGTGATGGCGGGCGTCCCCAA
TCTTGGCCGGGA
(3852 bp)

- SilkBase 1999-2023 -