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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40855_c2_seq4
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:1.66 TPM:1.31
ORF EntryO_BomoMG21728_internal:A_BomoMG_comp40855_c2_seq4
Sequence
(Nucleotide)
TTACTGTCTTTAGGCAAGAGTTATTGACGACACTGATTCCAATATTTCTAGGTAATCATC
CAAATTCAGGCATAATTCTCCACCACGCCTGGCATACACAGAACCCTAACATAAAACCTA
TCATCATGCACTCAATGGCAGATTGGTACATACGCGGTGAGAGTGACCAATCCAAATTAT
CTAGAATTTTGGACGTCGCACAGGATTTAAAGGCGCTGTCGCTCTTATTGAATGTACAAT
CGTTCCCGTTTGTTATTGATTTGGCTTGTTTGGCGTCTAGGAGGGAGTATCTCAAATTAG
ATAAATGGTTGACCGACAAAATCAGAGATCACGGTGAGACGTTTGTGTCGGCTATGGTGA
AATTTTTACAAAGGCGATGTCCACAGGTGCTCGGCAAGGCACCCGAAGAACAATTGCCTA
AGGCTGCGCAGCTGCCACCCGAAACGATTACAACAATGTTGGCTTGCTTACAACTATGCA
TTCCAAATGTTTCTCAAGAATTACAGGAGGCTATTTACAACGTAATAGGAAGCTGTCAGA
CGTTAATACTCAGCAAAACACGACAAAACATTGCGGGAATAGCAAGACCTCATACAAGGG
TCATGGAAACTCAATTCAATCCAGCTGGCCTAGGAGGGCAATTGTTTACACCCCACGTTG
ACGCTATCGGTAATTTGGCACCGGGCATGGCAAATATGACTTTAGGTGCCCCCGCGAATA
CTGCATTTGCTATGCCCGGTACACTCGGACCACTCGTAACCACTCCGGGCTCTCCTGTTA
GGCTACTTGGAGGCGGACCTAACAGTCCGTTTGCCATGATGCCGTTACCGCCCAACGCAA
ACCTCGGAGCGCTCGCGAGAATGGCTCCCGCTCCCGCGATTGATAAACCTCGTCTGCAGG
ATCCCATTCCCTTCCCGGAAGTGATGCACACCGTTGCTAAGGAAATCGAGGACGAAGCAA
ACAGTTACTTCCAAAGGATATACAATCATCCTCCACATCCGACTTTATCAATAGACGAAG
TACTAGATATGCTCAAAAAATTTCAGGATTCCCCTAACAAGAGGGAACGGGAAGTATTCT
CATGCATGTTGCGTAATCTTTTTGAAGAGTATAAGTTTTTCCCCCAATACCCCGACAAAG
AGTTACAAATTACTGCTCAACTGTTTGGCGGTATCATCGAAAGAGGATTAGTCCCAAGCT
ACGTGTCTTTAGGGTTAGCGTTGCGTTTCGTTCTTGATGCTTTACGAAAGGCCGAGGGAT
CGAAAATGTATTATTTCGGAATTGCGGCTTTAGATCGTTTTAAATCTCGTCTTAAAGATT
ATCACAAATATTGTGAGCACGTTCGCGCTATTCCGCATTTTAGTGAATTCCCTCCCCATT
TGATCGAATATGTCGAATATGGCTTACAAAGCCAAGAACCTCCCAATAAACCCCAGGGGC
CGGTACTTCCTGCTACGTTGGCTGCTATTCTTAATCAGAGTGCCGTTGTAACTGTCTCGG
CGCCTTATAGGCCAGTAGTTTGTGCTCCTCCATCTATTTCGGTGATGTCGAAAATGGCCG
CGTGCCCTGCTGGAAGCATGGGTAGTAGGCCATCTATCGCGAACGCTACAAATATCGACA
CTCTTTTGACTGCTACTGACAGGGAAGAAAAAATTAATGCCCCACCAGAACCCATACAAG
ATAAAACTGCTTTCATTTTTAACAATCTTAGTCAACTTAATTTGCAAACCAAATGTGAAG
AACTTAAGGAAGTACTTACCGATGAATACTATCCCTGGCTTTCTCAGTACCTTGTTATGA
AGAGAGCCTCTATTGAACTCAATTTCCATGCTTTGTATTCTAATTTCCTTGATGTTCTTA
AAGTCCGCGAAGTAAATAAATTAGTCACAAAGGAAACTTATCGCAATATCCGTGTGTTAT
TGCGTTCAGATAAAGGAATCGCTAATTTCTCGGATCGATCGCTTCTCAAGAATCTTGGTC
ACTGGCTCGGCATGCTAACACTTGCAAGAAACCAGCCGATTCTCCTCCTCGACTTGGATT
TAAAGGCGTTGGTCCTCGAAGCCTATCATAAAGGCCAGCAAGAACTGCTTTATGTGGTTC
CTTTCGTTGCGAAAGTTTTAGAATCTTGCGCGAAAAGTGTAGTATTTAAACCTCCGAACC
CGTGGACGATGGCCCTTATGAACGTTCTAGCAGAACTACATCAAGAACCCGACTTGAAAT
TGAACCTAAAATTTGAAATCGAAGTATTGTGTAAAAACTTAGGCCTGGACATAATGGATT
TGAAGCCTTCCCTTTACTTGAAAGACCCTGAAAAATTGAGGCAGATTGAGTTCCAACTAT
CACAGCCGAAGCCAAACAAAGAAGCCGCAAATACAATGCCGGTCAACCCGCCAATTCAAG
TACCACCGCCGCAGATACCAATAATGCCGCCTCAGCCTCCGATGATTCCTGCTGAAGAAA
TGGCAGGACCTGTCCCTCCTCCACCAACTGGCTTAGTGCCCGCCGATCCTGGTCTGATGG
GCGTGCTCGGTATGCCAGAACCCAGGTTCAACTATTTGGATGTGAACGTATCCTCCACGT
CTGCGTTCGGACAAAAGATTTGTTTCAACCCTCACATAATCTTATTCCAAAACTACCCGC
ATCTTAAACAGTTTGTAAAGCCCGCGATCGAGAGATCGATCCAAGAATGGATTCACCCAG
TCGTTGATAGGTCTATCAAGTATGCTTTGACAACTTGTGAACAGATCATACGGAAGGATT
TCGCATTGGACCCTGACGAAGTTCGAATGCGTACCTGCGCTCATCACATGATGCGCAACT
TGACTGCCGGCATGGCAATGATCACATGCCGAGAGCAGATCATCACCACCATCAGCACTA
ATCTGAAGGCAGCTTTCATCACTGCTCTCATGCCATCAACACAACAACAAAAAGAAATCA
TCGAGAGTGCAGCTGCTGTCCTTGCTACTGAAAACATGGAACTGGCCTGCGCTTTCATTC
AGAAGACAGCCGTTGAGAAGGCTCTACCTGAATTAGACAAACGCTTGATTAGCGATTACG
AAATGCGAAAACTGGCCCGTCAAGAAGGCCGCCGCTATTATGACACCATCGTCGTGACTT
ACCAGACTGAAAGGATCCCGGAAAGAGTCCGCCTGCGCGTCGGAGGTCCGACAGACATGC
AGATATCAGTATACGAAGAGTTCGCATGCAACATTCCGGGATTTGTCCCCGTCAGAGATG
CGGGCATGTTCATCCCGAAGCCGTCTCAAGAGCAGATTCCACAGCTGTTCATGAATCCAG
CTCAAGTGTACGGCGCTGACGAGATGGGCGCTCTGATAAACACTGCGGAACTATTCCTTG
CCAATTCCTTAGGTGTGGCTTCCTTGGCTGTCCAGGCAGCGAACATGCATACGCTGCTCG
AGTGCTTGTTTATGGCGAGACGGAGTCGCGATATTGTGTCTGGCTGTACTCTACTGCAGA
AGGCTGTAGATGGTTTGCTTGATGGACATTTAGTCCCACCCGGTGCGAGCAACGAACACA
TCGAAATGATGGCCCGCTACCGCGACATCCACCTTCGTGTCCTGAAACTACTCGAAGACG
CCAGAGTCTATGGACACGTTTGGACTTCCAAGCAGATCACCTGCTGCTTGATTGAATGCA
GGGAGGAACTCCGATACAATATCGAGGCTGTTGACTGCCTTATCAGAAACCATTTGGTTA
ATCTACCACAGTATGATATCGCCCTTGCTCATATGATGGACAATGGCAATAACTACGTGG
CGGTAGCATTCGCTATGCAACTAGTACAGCTGTATCTTGTCGATGACAGAAATAACATGT
ACGTTAACGAATCTGACTTGTACCACACGACCGAAATGTTAGTGAGGGTCATGTCCCACT
CAAGGACGCCTCCGCCCGAGGGTCTGGGCTCCCTGATCGAGATTTTGAGGGTGAATCAGG
ACCCTAGTGCATATTTGGGCGAAAGGTCACCGCTCGGACCGACGGCCCACATACATTCTG
GAATACTGCAAGTTCGAGCACAAAACTATGACGACCCACCCGGACTTCAAGAGAAGACTG
AGAATTTACTCCGTGAATGGAGGAATGTTCTCCTCAGTCCTCTGACAGAGATCGAACTGG
CGCAGAACTTCAACTTGTATGTCCACCGAATGAACATGAACGGCATTCTCAAATCTGATG
ACATGATCGCTAGATTCTTCAGAATGGCCTCGCAGATGTGCATCGAGAATGTATACCAAC
TTCTGAACGAGGACAGGGTTAATCCACCTCCAGTGCCTCAGAAACGTGAGAAATTCTACA
CCATGTGCGACTCTTTTATCAAACTTGTCTCGCTTTTGATCAAGAATACAGCCGATAGCG
GAAATCCCACTCCGAAATTAAACCTTCTGAACAAGATTCTAGGCATTATAGTTGGCTGGC
TACTCCAGGACCACGATGACCAGGGCACCAACTTCCAGCAGCTACCGTACCACCGCCTAC
TCCTGATTCTGTTCCTCGACATGAACATGGCTGAGCCTGTTCTAGAATCTATGAACTATC
AGGTTCTGACTGCGTTCTGCCACACCCTTCGCATT
(4595 bp)

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