SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40827_c0_seq3
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_hypoxia-inducible_factor_1-alpha-like_[Bombyx_mori]
Ontology
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001666 P response to hypoxia
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016607 C nuclear speck
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
Transcript
Level		FPKM:2.98 TPM:2.35
ORF EntryO_BomoMG21472_complete:A_BomoMG_comp40827_c0_seq3
Sequence
(Nucleotide)
TTTCGCGCCTCGATGGACTGCTTCGTTGCATTGTCTGATGTGAGAATCCGTGTGTTACAA
TGCTCGTTTATGGGCACCAGTATCCCGGTCAGCCTGCTGTGGTGGGACAGCCGGAGGCAA
CGGCATGGAACATTCAGTGCCACGAAATGAACCAAAACCAGATTCCGGATAATCGCATGT
GCACTCACAGTGGTTACAATTCGAACTACCCTACAAATCAGTGTTACAATAACGATCCAA
ATCCGTATAGTGTCCCGGCTCCGTATTATCCCCCACAAGAGGTTTACAATTTAGGAGACG
TCCAAGTGGGCTATTTAAGGCAGCCCGTGATACCGAACCTTCCGTGCCAACAATCTCAAC
AGTGGGATTACAGTTCTATGTGCTATAATGTTGATGGTCAGCCGTGCCAGTATACGAATG
TTGTCGATTTGGAAGATTTTATGAACAATGAGAAACGCAAGGAGAAGTCGCGTGTCGCGG
CCCGGTGCCGTCGCACCAAAGAGATGCAGATCTTTTCGGAGCTCACGGCGGCCCTGCCTG
CAAAAAAGGAGGAAGTTGAGCAACTCGACAAAGCGTCCGTCATGCGTCTGGCTATATCGT
ACCTTCGCGTACGTGATGTAGTCTCGATGCTTCCAGATGTCAACTCGGATCAATCCAAGA
TGCAGAATCCCGAAGGCTTCGAAGAGTTAGCTTCAGAGCTGTCATACATGAGGGCTTTGG
ATGGCTTCGTTCTGGTGCTCTCTCAACAAGGAGACATCGTCTACTGTAGTGACAATATAG
CCGAACATCTTGGAGTTTCGCAGATGGAGATAATGGGACAGAGCGTGTTCGAATTCAGTC
ACCCCTGCGACCACGATGAGATCCGAGAGGCTCTACGTACAAACGGCGGTGCCCGTCGCG
ATCTCCTGCTGCGTCTCAAGTGCACACTCACCAGCAAGGGAAGGAATGTGCACCTCAAAT
CGGCTTCGTATAAAGTAATCCACATTACTGGCCACATGTTGGCGTCGACTGAAGACAACG
AACGTAACAATAACGAAACCAAAGCCGACGAAGAGAAGAAAGGGAAGGCTGGTTGTCTTG
TAGCAGTCGGTCGTCCCATCCCACATCCATCCAACATCGAGATACCGCTCGACAGCAAAA
CGTTCCTGTCCAAACACAGCTTGGACATGAAGTTCACTTATGTCGATGAGTCTTTGTTGA
ACACACTTGGCTTCGGTTCAGAAGAGCTGGTCGGACGTTCGCTGTACGATTATCATCACG
CAGCCGACAGCGCTTCCATGATACAACAGTTTAAATCACTATTCTCCAAAGGACAATGCG
AGACTGGACAGTACCGTTTCCTGGCGAAATCGGGTGGTTACTCTTGGGTCCAAACTCAAG
CCACCGTGATCACCGACAAGCAGCAGAAACCTATCAGCGTCGTCTGTGTCAACTACATCA
TAAGCGGTATCGAGTGCAAAGATGAGGTGTTTGCCGCACACCAAGTGCAGCACGCCGATT
TGAAACCGAAGCTGCCAGCTGTCGCGTCGCCGGGCGTCTCCTTCCGTGCACCCGTCGAAC
CGCTCGCTAACGGCGCTATAGTCGCCATCGTTCCGCCGGAGGAAGAACGACCTATACCGG
TCACGGAACTCATATTCGCACCGAGAAAGAAAGAAATGAATAAAGGCTTTCTCATGTTCT
CCCAAGACGAGGGACTTACAATGCTTAAAGACGAGCCGGAAGATCTGACACATTTGGCGC
CCACCGCCGGTGACGCTTGTATTCCACTGGAGAACAGTCCTTTTGATATGTTTGATGAGT
TTATATTGAGCGATAACTATTGTAGTTTGCTCGGCGATGATTTAGCTAACGGATCGCCGG
TAGATCCTCTAGCTCCCGATCCCTCATTACTATCATCGCCTGAATCACAGGAAAATGATT
CGTCTTGCGAACAATCCTCATTACTGACAGAGCTGTCGCTGGATGCTTTCGATAATACAA
GGTCGGACGAGATTGACGACAGCAATTCGCCATTTATACCTATAAGCGATGAGCTTCCCG
TGCTGGAGCCGGCTGTCATGTGGGGAGCCCTGCCTGACAGTGTTAGCCAGGCCAGACCGC
AACCTTCCGAGACGCACACATCACCGGCACCGGCATTACAACGCTTACTCACGGGTCCGC
CCCCTCAGGATCTCATTACCAGCATATACTCAGACCAAGGTCTAATGCCAAGCAGAAGCA
TATCAACTTGGGATACGGGAGTGAAACGAGTGATGAAAGAGGAAGAAGAGCCTAGTGCCA
AACGCGTGAAGCGTAGTCCCTCCCCAGTTGCACCAAAACCGAAATCGCAATCGTCGAGTG
TCCTCATGAACCTCCTGGTGAGCGGCTGTGACGTAGACGCCGGTTACATCTGCATGGTTC
AGTGCCGGCCGCGTCAAAAAGCGAAAGCTTGAAATTTGAGCTCTCCAACTAAAAATAAAC
TGTGATAATTCGCGTCCAGTGTTCGACTATCGAGTGTAGCAAATCTTACTGCAAGCAACT
CTGTTCTGGTCGTTACGAATCGAAGTGCCGTCGTTTCTTGTGATATACTCAGTTCGACTT
AATCAGTCCGGGGGACGATAAACGCAGCGGGCCGGATTGAAGTCTGCCTAGACAATTCAA
TGAGGCGGATGGGACGTTGGAGTCGATTAGAACTGCTTAGTGTAATTAATCTTCCACAGA
CTTGCAATCTCGTGCTTCGCCCGAGGGCGTAACTTAGACTAGGAGACTTGCGGGTAAACC
CGTTTTTATTCTTTATTACATACAACGTACGATTCTAATCGAACTATGTTTTGTTAAGTG
CTTAAGTTAACGTGCGCATATCGTTGTGGTTATGTGATTGACTGTTGAATCGTTCCTAGT
ATATTGTAGTTACCGTGTCGGTTAATAATAAAATGACAATTAATATATTAAAGTATTTAA
TGAATATGTGAACCGACTCTTCAGTGAAATTTAAAATCGAATTGAACAGTTCGTATCGAT
CGAATGCAGACCACTGCAATCGGTTCACGGAATATAGCTCTGTATTATTTATAAATTTTA
TAATATGTACTGTTAGTTTTCTAGAAATATAAATTATGTTATATATACAACGAAATAGCG
TTCTTTAAGTCGACGACATAGATTATTTTTTTGGGTAACGTGTATTTTACGAGAGTTTAT
GTAGGTAGTCGTAGTTTTCATGGCAGTTTCGGAAAATAATAAATCGATAATGCACGCTCT
GCACTAGCGGCAAGCTCTCGAGAGCCGCGTGTTGAATATTCCTTTGCCGTCAATGCGCCG
TGTCGGTCACGTGCATACAGGTACTGCTGCTATGACATTTTACGCTATTTAAAACAACCA
GAGGGGGAACCTTATGAGATTTTTCTTAGGTTTACAAGATTGTGAGAACGATTAAAAGAC
TATTAGTATGTAACGGAATCTTTGAATATGATTTTGACCCCCGTCAAAACGTCGGATTAA
CTCGAAA
(3487 bp)

- SilkBase 1999-2023 -