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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40689_c0_seq2
Scaffold_idBomo_Scaf003
NCBI non-redundant
(nr)		S08405_hypothetical_protein_2_-_silkworm_transposon_mag
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:0.37 TPM:0.30
ORF EntryO_BomoMG20201_internal:A_BomoMG_comp40689_c0_seq2
Sequence
(Nucleotide)
GGGGAAGAGTAGTTCACCGCCACTGGTTCCTCGCCACTTGTCATGGGAAATGATAGCGAC
TTACGTGATTGTGTTCTTAAGTCTAAATTTTGCGCGATCAGTTCGGGACTTATATTTTTA
CGAATCGACGCAAAGGTATCAACTTTATCTATATTTTTTGTAACCCTTAATTTTAGCTGA
TCGACGTGCCTATGATTCTCGGTTCCAAAACTAGATCGTACACAGTAATCACGACTACCT
AATTGCTTGAGGATCGTCCCAGGTACCCATTTATCCAGACCTCGATAATCCCGATACCAC
ACCTTAGTGCCCGGCTCGAGTTGTCGCTGCACACCCCCTGCGTTTTGCTCGCTCCGCTCT
TGTTGCGCGATAACTCGAGATTGCCTTTCTGGTTTTAAATTATCTAATCTCATACGGAGA
CTTCGACCCTGTAATATATTGGCTGGACTATCGCCGGTAGTTGCATGTTCTGTATTTCTG
TAGGCTAATAAAAATCTACACAGAGCTGTATCTACGTTTAAATTCTGTTTTAATGCCTTT
TTAATCGCACGTTTACAAATTTTAACTGCATTTTCAGCGGCCCCATTAGAGGCGGGATGA
TAGGGAGCTGAATAAATATGTTTTATGCCATTATGAATCAGAAACTTCTGAAAATCAGAG
CTCGAGAAAGGCGGTCCATTGTCACTGACCGTTTGCTTTGGCAGGCCGAATTTTGACCAC
AAGTCCCGCAGTACCGATATAACCGCTTGTGCCGTTGTCCTCTGCATTTTAATTGCCTCT
ATCCATTTGGAGCATGAATCCACTACAACTAGGTAAGTGACTCCACCTATGGGGCCTAAG
AAGTCTAAGTGTAACCTGGACCAGGGGCGTGAGGGCCAGGGCCACGAGCGGGGCGCGTGT
GTAGAAGGTGCGTCTGCGACGGCAGCACACACGGTGCAAGCGCGACATTCCGTCTCGAGC
GCTTCGTCGATTCCCGGCCACCAAACGTAACTACGTGCTAGCGATTTTGTTTTCACTATG
CCCATATGCGGATCATGAAGCTCCGTTATTATTTTGTTTCTGCATGAAGAGGGTATAACC
ACACGATGACCCCACATTATACATCCTAATTCAATATAAAGTTCGTTTTTCCTATTATAA
TATGGTTTTAATTCATTAATTTCTATGTCTAAGGGCCATCCGTCCCTTAAATAACTTAAT
ACGCGACTTAAGATTGGATCACTACTAGTTTGTTTTTTAAGAACATTATAATCTATTAAC
AGAGCTTCTGTTGAGAAGTGTAAGTAGGTTTGCTCGGGTAAGTCTGTTTCCTCGGAAGCT
ACGTCATTTTTTTGAGACTCGATTAACCGTGAAAGTGCATCGGCTACATTTTTATCTGTC
CTAACGTACTCGATTTCAAAGTCATATGCTGATAGTTTGATAGCCCAGCGCTGCAAGCGG
CTAGCTGCCGCGCTCGGGATACCTATGTTAGGCCCGAAAATGCTCACCAGAGGTTTGTGG
TCGGTCCGTAGTATGAACTTTCTCCCATATAAGTATTGATGGAATTTTTCCACCGCGAAA
ACAATCGCCAATGCTTCCTTATGAATCTGACTGTAGTGTAATTCATGAGTGGTGAGTGCG
CGTGAAGCGTATGCAACGACGCGCTCCTGACATCCTGGCCCGCGCTGCGCCAACACGGCA
CCCAGACCACGCGCGCTCGCATCCACAGTCAACACCGACTCCAAAGACATATCAAAATGT
GCAAGTGCTTTTGTACTACACAAAAACTTTTTAACATTCAGGAAAGCAGCATTCTGTTCA
TTTCCCCACATCCAGTGCTTACCTTTTTTTAAAAGGGCATATAAAGGTGATAAATGTGCA
CTCAAATCTTGTATGAACTTCGAATAGAAGTTTACCATACCGATGAAAGATTTTAATTCT
GTCACGTTATTTGGGTGTGGCATTGTTGCTATTGATTTGACTTTCTCTGGGTCTACACGA
ACCCCATTTTGATCTATTATGAACCCTAAATACCTCACTTCTGTTACCATGAACTCGCAC
TTACTCCTTTTAATTTTTAAGCCATACCTTTCTAATATATCTAATACTTCTTTTATAGAC
TTTAAATGACTGTCTAGGTCCTGATTTCTAATCAATATGTCATCATAGAAAACTACTACA
TTTGGGACATTTTTAAACATATTTACCATTAGTTTTTGAAAAATGCCTGGGCTCGAAGCT
AACCCGTAGACGAGGCGGGAATATTTAAATAATCCTCTATGTGTATTGATAACCGTGTAC
TCGCTAGAACGTTCTGATAAGACTATTTGATTATAAGCTTGAGATAAATCAAGCTTAGTA
AAAAATTTATTTCCGCTGAGATTACTGAATAAGTCCTCCATTTTTGGAACCGGAAATCTG
TCGATTGCTAATACTTTGTTAAGGGTTACCTTATAGTCCGCACATATTCTCAGACCGCCG
TCCGCTTTGCGTACTACGACAAGTGGCGTGGCCCAGTCGGAGTGGTCCACCGGTTTGATG
ACGCCGGCGGCCAGCATCGCGTCGAGCTCGGCATCGACGCGCTCGCGCAGCGCATACGGC
AGCGGTCGCGCGCGGCAGTAGATAGGCACCGCATCCGGCCGCACGATTAACTCTGCTGTG
CCCCCCGTATATTTACCCAATGTGCCGTCGAACAAGGATTTATGTCTAGAAACAATTTCA
TTAATTAATTTATTATAGTCTCGTGCGTGTTCGGTTACAAAGTTACTGTGTTGTATTTTA
AAACTCGTAGGTTTTGATATTTTTATATTAATATTCAATTCAGCTAACCATTGTCGGCCC
AATAGATTAGTCGTTCCTTTGTCTATGACATACAAGTCTAACATTTTTGAAACACCTTGG
TACTTCACTATAGTGTTTATAAACCCTAAAGGCCGAATGATTGAGCCATCGTAAAATTTT
AAATTTAATAAGCATGCCTGTAACTTCTCCTTAGAAAAATATTTATCATAAACATTCTTG
CTAATACAAGATAACGCCGATCCAGTATCGACCTCCATCTTGAGCAAGCAATTTTGGACT
TTAACTTTAATACACACCGGTTTATAATTACTCAATGTCATTTGGTACATAGGCTCATTT
TCTTCTCCACACCCGTCCTGTTCATTATTGAAGTTGTTGTATGTGTCATCGTTGTTTTGA
TCGTATAATAAGTGCAAAGGAGCCCGCTCTCGGCCTCCTCGTCCCGCACCGCGCTGCCCG
CGCCACGATCGCCTGTTGCCGCCTGCACCCCGGTTCCCCCGGCGCCCGGTGCGTGCTGAA
C
(3301 bp)

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