SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40677_c0_seq11
Scaffold_idBomo_Chr2
NCBI non-redundant
(nr)		PREDICTED:_talin-1_[Bombyx_mori]
Ontology
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
Transcript
Level		FPKM:5.94 TPM:4.69
ORF EntryO_BomoMG20087_5prime_partial:A_BomoMG_comp40677_c0_seq11
Sequence
(Nucleotide)
CGGGGCTGGCGGGCGGGGCTGGCGGCGGCGCAGGCCTACCGCGCGCTGCTGCAGGCCGTG
CTGCAGGCCGCCACCGGGGACTCCGCCGCGCGCCAGCAGTTCCCGGAGCTGTCCCGCCGC
GTGGCGCACACCGTCGCCGACATCATCGCCACCGCAGAACTGCTCAAAGGTTCGGACTGG
GTGGACCCCGACGACCCCACGGTGATAGCCGAGAACGAGCTGCTGGGGGCCGCCGCCTCC
ATAGACGCGGCCGCCAAGAAGCTGGACTCGCTCCGGCCCAGGAAACCAGTGAAGCAGGAA
GCCGATGAGACTCTGAACTTCGACGAAATGATCTTGGAAGCTGCCAAGTCCATTATAGCT
GCGACGTCGGCCCTCGTCAGGGCTGCCTCCGCGGCGCAGCGGGAACTCATCGACCAGGGT
GCCGTGGCGCGCCGGCCCGCCATGTCGTCGGACGACGGGTCGTGGTCGGGCGGGCTGGTG
AGCGCGGCGCGGCTGGTGGCGGCGGCCACGCACTCGCTGGTGGAGGCGGCCAACGCGCTG
GTGCAGGGCGCCGCCACCGAGGAGCGCCTCATCTCCAGCGCCAGGCAGGTCGCCTCCTCC
ACCGCGCACCTCCTCGTCGCCTGCAAGGTGAAGGCGGACCCCGGGGCGGAGAGCACGCGG
CGGCTGCAGGCGGCGGGCGCGGAGGTCATCCGCTCCACGGACAACCTGGTGCGCGCCGCC
CGGGACGCCATCCACTGCGACGACGAGCGCAGCCTCGTGCTCAACCGCCGCATGGTGGGC
GGCATCGCGCAGGAGATCGACGCCAGGTCGGAAGTGCTCCGCATCGAGAAGGAACTGGAG
GAGGCCCGCGGCAGGCTGACGGCCATCAGGCAGGCCAAGTACAAGCTGAGGAGCGACGCT
GACGACTCCGACGCTGACCCGCAGCCCGGCTACGGCAGCGACTCCTCGGGACCCCAGCGG
GTGCGGACTCCTAACAGCAGCTTCGCGAACACCACGTACAGCCCCAACAGCTCGCAGCAG
ACCACGCTGCACCAGAGCTCGCTGCTGCAGACCACGCACAGCTCCGGACTCAACTCCACT
TCCTACGGACAGCAGAACAGCAGCCCCGCCCCCCCGCAGCCCACCAGCCCGACGTTCTCC
AGCTTCCGTCCGGCGCCGGACGCGCCCAAGCAGAACTACGAAGCCTTCACGACACGCGCG
AGCGCCTCCGACGAGACGGTGGTCGTGAAAAGCCTTCGTCTGCCGGAAGTGCGTAGCGCG
TTGCTTGTCGGTGCTGACCCCGGGCCACACACGGTCCGTTACAAGCGGGAGACGCCCCCG
CCGCCGCCCCCCAGGAGGATAACGCTAAACTACGAAACTCGAATGTACGACACGCCGCGA
CCGGTAGCCGAGCACTCCACCACCGAGCGACAGGAGACCAGCCAGTACAGATACAAGCAG
GAGAAGTTGGACTACGAAGCGCCCAGGACGCCCCTGAGCCCTAAGTTCAACGCCAGAGAG
CTTAAATTCGACGAGCACCCCGAGCCGATATACTCCACCCTGAAGAAACCCTCCGACGGT
TTGGGACAGACGTTCTCGGAGCACCAGAGGTCCACGGAGTCCATCCCCGGAGGCACCAAG
CATTCAGAATACACAATCAAAAGTGAATCTTACCAGTCGTTCCCGAAGACGGAGTTTTCC
AAAACGGAATTTAAGCAGGAAGTGAAATCTCCATTCACATCCACTCCGAAGTTTGATCGC
ACAAGCTACGTGACCACCTCCAGTGACCTGGTGAAGGCCGCCACGCCGGACTACGAGCGC
ATGGCTTCGCCCTACGCCAAGGAGGGCGACAGCTACGGAGGTCCCAATTACATGGAGGAA
ACCACCACGGAGGTCAAAGAAATACCCAACGGCACCCAGAAGATCACTACAACGAAGATA
TACAGCTCGTCGCCCGTCAACCTGACCTCCACCAGCACCAAGTACGAGCCGATCAAACTG
GACGGAATCGACGAAATCTCGAAGACCTTCGACAGCGACTCCCGGTACAGCACCCTGGAC
TCGAGGTTCAACACGCTAGAGTCCAAGCTCAGTTCGGACACGAGCCGCTCCTTCATGAGG
CCGTCGGAGTTCCAGTCGTCAGACTACCAGACCACCAGCAACGTGACGAAGATCAAGAAG
CCGGATCTGTCGAAGGAGATCGACAGCCTGGACAAGAGGATCTCAAAGCAAACGATCACC
TCGGAGACTATCGAAAGGAAGTCCGTAATGACCAGCTCTCACAAATCGGAGACCAGCTCC
ACCGTCACCAAGAAATTCGGGAACTTCTAGAAGGTAAATGACGCAACTTGTCGTGGCGTG
CTTCGTGCGTTGACAGCTGTCACCCGTGACACCTGTCAAGGACTGTGCTTATTGTCAATG
ATCCGTGCTTAGTCGTTAAGAATCGAGTGTAGATCTTATTTTTAAGGTTTTCATTGTGTT
CTACTGAACTTAGTAGAAACATTAGGTTTTTTTTTTCTACTAAATTGGTAGAAAATCGTA
AGGTGCTAAACGTTATCGTGAACTAGGTGTCTAAACTAATGCCTTAACTGTAATTTATTG
AATGTTTTTGATGTCATTTTTATTATAAAAAAAAAACTTATCTTTATTTCTTAAAAACTA
TGAGTAATGTGTCATAATGATTCAACCAACTTGTAAGAAATAACGCACGAATTGTTCATA
TTTTGTACACTTTTTAATTAATAGATAAAAGTTCTTATATAAAAGTTTCATTCCTAAAAG
TGGCTCCAAAGCTGAGGCCTTAATACAACAATACTGTGTCGAGCTTACTTCACTCATAGT
TTTTATTGAATAATCTAATAACGTAATATGTAAATACGAACAGATCTAAGGTTTTATCTA
AAGTTGATTTTGGGTAAACAAATAATTGGCCCGTTTCAAGCGTGCGTCAGCGCTGTTGTC
CCTGGGCAGCACGGCCCAGTGTCTCGCGGACGACGGTTGATAACAGTGCGGCTCAATAGG
GCTCTATAAATGGGAACTTATGAAATTCAAAAGGCATTGTTACAGATCGCCATACAAAAA
TAAATTGAGCCATAGTCTTAAATCTGTTTCGTACATTAAGCTATTCACAAAGTGGCCCCG
GGCGCCCCGGACTGCGCCCCCGCCGCGCTCCTCACTCATTGATAATGGCGAGCTATTTTT
GTGTTTTTTTAATGTACAATTTTTTTTTGTTATTTTAAAATTTATATTATTAATTAAGAA
AATGTTTTAATATTTTGACAACAGATGGCAGTTTTATAATTTTTTATTATATTATCTTAT
TTGCTTAGTGATGTTTAGTGTAGTGTTGCGTGTGGAATGTGGTCCGCGGGCGCCGACATC
CGCAGAGCTTATTGTTAACGTTCCAAGGAAATATTGTGTGTGCCATGTTGACTATTCAAA
TTTATTGACTAATATATATCTATTTTTATAAAAAGCTGTTGTTATTGTCTGTGGTTCCGC
GAGTTGTTGTTTTAGTGAGGTTTTTGGTTGACCTCACCAGGACACGGCAGGACTAGGTCG
GTGTAGAGCTTGTCGGAGTGGAGGGGCGGAGGCCCACACTGCTCTAGGGTCCCTCACATG
TTAACACCCCACTGAGTTATGTGTTGAATAACAAGTCAAATATTTACATGTGGTGTATCT
GTCGGTGCAAATAATTAAGCAGTATATACACAGACTAACTTTGAGTGCAACTAATATATT
GATGTTTTAAAGTTACTACTAAAATAAAGGCTTAAAAACTATATATATGTTTCTTTATAT
TTGTATTTATGGGTGTTGTGTTGTTGTCCAGACGACGACAGAGAGATCGCTTAGTGTCGC
GCGTCCGGTTTAAATGTTACAAGAAAACAATTCCCACCGATTTTGTTCAAAAATAAAAGT
TTAAAAATTTCATTTCTTAAGTTTAGTATAAAAAAAAAATTTTGTTTTAATGTTTCCCCC
AGCGACATGACTCGAGGTGCCGACGCGACCCCCACTGATATTAGTTCAAATCATTCTTGT
ATCTCAGCATTGATTCGAGAGTCTTATGATGAAATGTGCCTTACGTGCAGCTCATGTGGC
GCCGGACGCGCGGCCGACTGTATATGAAAACTTATTGCGACTGTGGTAGCTCTATCTCCG
TATAAATATATATAAAGAAGTTATTTTGTACCGCCTTTTATGCGCGTTTTGCCGATGCGC
TAAATGGCAGCTGTTAGCGCGGGGTTGAGGAAAAGGAAGACTTTGTTTCCGACTCGACTG
GCAATTAACTTAAAATAATAAATTCTCTATTAATTACTGTTCAATCAGAACCTATATTGA
CCCGGACTAATTTGTTTGGAATAAGTTGCAAAACATTCGTCTCGTTCGCACACATAGCAC
GGTAACGCTCGTGTGAGCGAGACGAATATACTCTATTTTGCTTCAGAGATGTTCTATGAA
TTCTTATATGAATTAAAAATTCTGTAAATAATTTGTTTTTAGTATTTTACGGTAGATGGC
GGTGTTCTCTGATCCTCACAGTGCTTCTATGGTCACTGCTGTCCACGACGCGACGAACAC
TACAAACAATATCTGCTCATCTCCTAACAAAAAATAATGTAATCGAATTGTTTAAATATA
AAAAATAATCGTTCCCAAAGCATTTACTCGTTTTGTCTGAAAACAAATTATGAACAGTTA
ATTTTGTTACAATTATTATTAATTTAACAGTTTTTATATCATTATATTATATAGTAATTT
AAATAATCTCATTTATTAATGATAATACCAAATAATAATAGAAATGTAATCAAATACGAT
TTCGTCAATTGTTGTATTTTATTGAGAGTTTAACGTATGATAATTAATATATAAGGTAGC
TGCGGCAAGAGCGGCCGGTACATGTGTAATAAATGTCTTACTAATGAAAAAAAA
(4914 bp)

- SilkBase 1999-2023 -