SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40651_c0_seq3
Scaffold_idBomo_Chr9
NCBI non-redundant
(nr)		PREDICTED:_exosome_complex_exonuclease_RRP44_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043547 P positive regulation of GTPase activity
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:4.81 TPM:3.80
ORF EntryO_BomoMG19810_internal:A_BomoMG_comp40651_c0_seq3
Sequence
(Nucleotide)
GGACATGTGTTACATGCTGCAGATCCGCACAAAGATGATGAATTGGTATTGGAGACCTCT
CCCAAATCTCCATGTGCTTTGTTTGATTTCCCACATTATCTAGTATTGGATACTAATGTT
GTGTTACATCAAATAGATGTTTTGGAGGAAGATGCTTTGACTAATGTTATCATTTTACAA
ACTGTACTTGAGGAAGTGAAACATCAAAATACTGCAGTTTTCCAGAGATTGCTGGATATA
ATTTCCAACAAAAAGAGAAAGTTTTATTCATTTGTTAATGAACATCACAAGGATACCTAT
ATAGAGCGCTCACCGGGTGAGAAACAAAATGATAGGAATGACAGATCTATACGTAAAGCA
ACATCTTGGTACGAATATCACTTGAGCATAAATAGCCTTGATGGAAAATTCCCAAAGATA
ATATTGGTGACGGATGATGAAAATAATCGAAAGCTTGCCCAAGAAGATGGCATTATTTGT
TGTTCAATTAAAGATTACATAGAAAACGTATCTGGATTTGTTGGTTTAGTGGATAAACTA
TCTAAGAATGTAATGCCTGAAACATGCTCTAAAGATGCATTATACCCTGCACATTTAACT
CCATCACAAATACATGAGGGGATCCGCTGTGGCCAACTGTATCAAGGCACATATCATGCT
TCTAGAGAAAATTTCTTGGAAGGAAATGCCAGTGTTAATGGTTTTGAAAAGTCGATATTA
TTGCAAGGTCACATAGGCATAAACCGTGCTATAGATGGTGATATAGTTGCGATAGAAATT
TTCCCTAAAGAAGAATGGCGGAAACCTAGTAATATAGTTCTAGAGGATAAAACTGAGGAC
CCTGAAAATATTTTAGAAGAAGAGACTGTTTTGCTTGATGCTGCAAAACCAGTAGATAAT
GATGACGAAATCACCCCTACAGGAAAAGTAGTAGGGATAATTAGAAGGAAATGGAGACAA
TATTGTGGAATTCTAATGCCTAGTAAATTTCATGGTGCAACACGTCATCTCTTCACACCA
GCGGAGAAGAGAATTCCTCGTGTTCGTATCGAAACCAGACAGAGTGAAATACTGGCCTCG
CAACGCATTTTGGTTGCTCTTGACTCTTGGCCCAGGAACAGCCGATATCCACTTGGACAT
CTTGTAAGAGCACTCGGGCCAATTGGTGACAAGGATGCAGAAAACGAGGTCATACTGCTA
GAGCACGACGTTCCTCACGCGAGATTCAGCGAAGCCGTACTCAACTGTCTACCGCCCAAC
GATTGGACTATACCTGAAGAGGAAAGGCAGAAACGTGTAGATCTACGCGACGTGTGCGTA
TGTTCCGTGGATCCGCCCGGGTGCACGGACATAGACGACGCGCTGCACGCCCGCAGGCTG
GGCTCCAGCGACGGGCTCGCGACCTACGAAGTGGGCGTGCACATCGCTGACGTCACGTAC
TTCGTGAAGCCCGACACCGCCCTGGACAAGGAGGCCGCTTCGAGGTCAACTACAGTATAT
CTCGTCGACAGGAGGATCGATATGGTGCCGGAGTTACTTAGCTCGAACCTGTGCTCACTT
AGAGGCGGCGAAGAAAGGCTCGCCTTCTCGTGCGTGTGGGAGATGGACGAGAACGCTAAT
GTCTTGTCTACGAAATTCCACAAAAGTATCATAAAGTCAAAAGCTGCGATGACTTACGAA
GAGGCTCAGATCGCAATCGACGATTCGAGTCGCAAAGACGAGATAGCGAAATCTCTGCGC
GTACTCAACAAACTCGCTAAGAAACTTAAGAAAAAGCGATTGGACAGTGGGGCCCTGTTA
CTGGCCTCGCCCGAGATCCGATTTCAGGTAGACTCTGAGACTCACGACCCAATCGAAGTG
CAAGCCAAGAAGATAGTTGACACTAACTCAATGGTAGAAGAATTCATGTTGTTAGCCAAT
ACCAGCGTGGCTCAGAAGATTCTAGAAGAATTCCCTCAATGTGCCATGTTGCGGAGACAC
CCGGCGCCGCCTCCTGCTAATTTTGATACTTTCTTAAAAGCTGCGAGACAACAGGGCTTC
GAAATCGACGTGTCAACGAACAAATCGTTTTCGAAATCGCTGAACGAGGCCGTGATACCG
GAGCGGCCGTTCTTCAACACGCTGCTGCGCATAATGGCGACGCGCTGCATGCAGCAGGCC
GCGTACTTCGTGAGCGGCAGCCTCGCCGCCGACCACTACTACCACTACGGACTGGCCTGT
CCCATCTACACGCACTTCACCTCGCCCATACGGAGGTACGCGGACGTGGTGGTGCACCGG
CTGCTGGCGGCGAGCGTGGCGGGGGCGGGCCCGCACGCCGCGCTGCTGGAC
(2331 bp)

- SilkBase 1999-2023 -