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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40651_c0_seq1
Scaffold_idBomo_Chr9
NCBI non-redundant
(nr)		PREDICTED:_exosome_complex_exonuclease_RRP44_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043547 P positive regulation of GTPase activity
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:7.25 TPM:5.73
ORF EntryO_BomoMG19809_internal:A_BomoMG_comp40651_c0_seq1
Sequence
(Nucleotide)
CTCGCCCGAGATCCGAAATGTTATCATTTTACAAACTGTACTTGAGGAAGTGAAACATCA
AAATACTGCAGTTTTCCAGAGATTGCTGGATATAATTTCCAACAAAAAGAGAAAGTTTTA
TTCATTTGTTAATGAACATCACAAGGATACCTATATAGAGCGCTCACCGGGTGAGAAACA
AAATGATAGGAATGACAGATCTATACGTAAAGCAACATCTTGGTACGAATATCACTTGAG
CATAAATAGCCTTGATGGAAAATTCCCAAAGATAATATTGGTGACGGATGATGAAAATAA
TCGAAAGCTTGCCCAAGAAGATGGCATTATTTGTTGTTCAATTAAAGATTACATAGAAAA
CGTATCTGGATTTGTTGGTTTAGTGGATAAACTATCTAAGAATGTAATGCCTGAAACATG
CTCTAAAGATGCATTATACCCTGCACATTTAACTCCATCACAAATACATGAGGGGATCCG
CTGTGGCCAACTGTATCAAGGCACATATCATGCTTCTAGAGAAAATTTCTTGGAAGGAAA
TGCCAGTGTTAATGGTTTTGAAAAGTCGATATTATTGCAAGGTCACATAGGCATAAACCG
TGCTATAGATGGTGATATAGTTGCGATAGAAATTTTCCCTAAAGAAGAATGGCGGAAACC
TAGTAATATAGTTCTAGAGGATAAAACTGAGGACCCTGAAAATATTTTAGAAGAAGAGAC
TGTTTTGCTTGATGCTGCAAAACCAGTAGATAATGATGACGAAATCACCCCTACAGGAAA
AGTAGTAGGGATAATTAGAAGGAAATGGAGACAATATTGTGGAATTCTAATGCCTAGTAA
ATTTCATGGTGCAACACGTCATCTCTTCACACCAGCGGAGAAGAGAATTCCTCGTGTTCG
TATCGAAACCAGACAGAGTGAAATACTGGCCTCGCAACGCATTTTGGTTGCTCTTGACTC
TTGGCCCAGGAACAGCCGATATCCACTTGGACATCTTGTAAGAGCACTCGGGCCAATTGG
TGACAAGGATGCAGAAAACGAGGTCATACTGCTAGAGCACGACGTTCCTCACGCGAGATT
CAGCGAAGCCGTACTCAACTGTCTACCGCCCAACGATTGGACTATACCTGAAGAGGAAAG
GCAGAAACGTGTAGATCTACGCGACGTGTGCGTATGTTCCGTGGATCCGCCCGGGTGCAC
GGACATAGACGACGCGCTGCACGCCCGCAGGCTGGGCTCCAGCGACGGGCTCGCGACCTA
CGAAGTGGGCGTGCACATCGCTGACGTCACGTACTTCGTGAAGCCCGACACCGCCCTGGA
CAAGGAGGCCGCTTCGAGGTCAACTACAGTATATCTCGTCGACAGGAGGATCGATATGGT
GCCGGAGTTACTTAGCTCGAACCTGTGCTCACTTAGAGGCGGCGAAGAAAGGCTCGCCTT
CTCGTGCGTGTGGGAGATGGACGAGAACGCTAATGTCTTGTCTACGAAATTCCACAAAAG
TATCATAAAGTCAAAAGCTGCGATGACTTACGAAGAGGCTCAGATCGCAATCGACGATTC
GAGTCGCAAAGACGAGATAGCGAAATCTCTGCGCGTACTCAACAAACTCGCTAAGAAACT
TAAGAAAAAGCGATTGGACAGTGGGGCCCTGTTACTGGCCTCGCCCGAGATCCGATTTCA
GGTAGACTCTGAGACTCACGACCCAATCGAAGTGCAAGCCAAGAAGATAGTTGACACTAA
CTCAATGGTAGAAGAATTCATGTTGTTAGCCAATACCAGCGTGGCTCAGAAGATTCTAGA
AGAATTCCCTCAATGTGCCATGTTGCGGAGACACCCGGCGCCGCCTCCTGCTAATTTTGA
TACTTTCTTAAAAGCTGCGAGACAACAGGGCTTCGAAATCGACGTGTCAACGAACAAATC
GTTTTCGAAATCGCTGAACGAGGCCGTGATACCGGAGCGGCCGTTCTTCAACACGCTGCT
GCGCATAATGGCGACGCGCTGCATGCAGCAGGCCGCGTACTTCGTGAGCGGCAGCCTCGC
CGCCGACCACTACTACCACTACGGACTGGCCTGTCCCATCTACACGCACTTCACCTCGCC
CATACGGAGGTACGCGGACGTGGTGGTGCACCGGCTGCTGGCGGCGAGCGTGGCGGGGGC
GGGCCCGCACGCCGCGCTGCTGGAC
(2185 bp)

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