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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40646_c0_seq6
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:3.68 TPM:2.91
ORF EntryO_BomoMG19703_complete:A_BomoMG_comp40646_c0_seq6
Sequence
(Nucleotide)
CCCACTGTCAATCATTTAATTTCTAGAAAACTTACAAAATACATTTATTTTACTTTTATG
TCAAGATACAGTTTTTTGTCGGCCTGATGAGCTCATTATCCCTTTGGACCTTTGAATTCA
GTCACAAATATCCATGTTTTTAATTTATAAAAAAATCCGACCTCAACTACATTATGTTTC
ACGAACATACGTTTATCCAAACAAATTATTTTAATTACTAATATAGTAGCTATAATTCTT
ATCTAAAGCCTGTAGCTACATTCTAAAGTTAATTGTAAACGTAATCTTAACCTAACCTAA
TACATGGAGAAAAAGGTGACTGAAATCAAAAGTATGTACTGATTCGTACGTCCATCACGA
ATGTTCTTCAAATTACTAATAGTAGTTGGGATACTGCGGCCAGGCGTGGGGGTGGTGTTG
GTAGGGCCCGGGGGGCTGCTGGTAGCCCCAGGTCGGCTGGTAGGACTGCGTGTACGACTG
GTCGTAGGACTGCGTGTTTGTCGTCGGCGCGTAGTAATTCGCATTCGTCGTCGGAACAGA
ATTGGCGGTTGCCGTACTCTCTTTTTTCTTAGAATCAGTTACTGCTGGCGGCGGCGGCGG
GTCGTGCTTGTCTTTGCGGGCGCGCTTGCGGAGATGTTTGGCGAGAGCGCGCGCGTGCGC
GTGTGCGGCGCGGGCGTGCGCGGCGCTGCCCAGCTCCTCCGCGAGCTCGCGGCGGCGCCA
CGCCATGTGCGCGCTCACCTCCGTGTCCGCGCCCTCCTGTCTCGAGTACGACTGTGCCAG
CTCATCCAACTCTTCGTAGGTGACGCCGGGAGTGTTGATGGCGAGGTCAAGTCTCTGCAG
GTGCAGGCGCGGGTTGAGCGGGTCCTTGGCGACGGCGTCGTCGAGCGCGGCGCGGGCGGC
GGCGGGCTGGCGGCGCACGTGCTGCAGGAACCGCGCGTACTTGATGGCGAGCGCAGACGC
CAGCGACTTGTTCTTCGAAGTGCTGATGTACGTTTCGTATAGCTGAGAGCACTTCTCGTA
GTCGCCGCGTCGTCGCTCGAGGTTCACTCGCCTGTACTGTATTTGTACGAGATTGGGACA
GGTTTTCTCTATACGATCAAGTATCTCGGCAGCTTTCAGTGTATTGCCCTGCACCTCTTC
GAAGTGTGCCCAGTGTAGGTGGAGCTCTGGCTTGTCGAGGTGATGCACTGTGCAGGCTCG
CTCTAGTACTTCCCGTTCTATTGCTATCACTTCAGGATCTTGTTCAGCACGTTCTTCCAG
AAACTTTATAAGCTTCATCCAGAATTCTTCATATAAGGCACATGCAATGAGGCATCTCTC
GTGGAGCACGAGGGCTCGCTTGAACGAACCGTGGTGCTTCTCCCATTCGAGGTACGCCTT
CCAGTTCTTTAGCTGGCAACGTTCCAGGGGCTTCACGTGGAAATAAGGCCGCTTGATTCC
TTCTTCGAAAGTCCACCTCGCAGTTACTTCTTCGCCGGTCGTTTTATGAATTTTTCTTCG
AGCTGCAACAATCCGTTCCTTGATGGCTTGCGCCTCTTCATCGGATGCGACATGGTCGAC
GGGCTCGTCCTCCCCGGGCGGCAGGTCGAGGCTGGGCTGCGCGCCGGCCGCGTCCCGCAC
CTCGCCCCGCAGCCGCACCAGCTCCGCGTGGCTCACCACGCCGGTCACCGGCTCCGACAT
CACGTGCTCCTGGAAATTGTCGAAGTGTGACGTGTACCCTAAGGTGGGTGTTGCCAAAAG
ACGATCGTAGATATTCGTGACATTGAGAGCGGAACCATTTTCCGCTTCCCATTTGATGTA
AGACTCCCAAAGACGATCCGAGCGAAATTCTAGTCCGCATGCATCTATGGCTCGTTCATA
CTGAGATCTGATGTACGCATGGTCTTCGGTTTTAGTCGCTTTTATATGATTGAGGTAATG
TATCCAGAGGTCTACGGATAAAGGTATAGCTTTAAGTCCCCTTTCCAAAACCTCTAAGCA
CTTCTTTTTACTTCCTTTACGTTTTTCATAATCTGCAAACTTTCTCCAATATCCATAGCA
ATAAGGATAGTGGGATAAAAAGGCGTCATAGGCTTCACGTGCAGCTTCAACATCGCTCTC
TTGATCGACATATTGTAATAGGTAGGTCCACCCAGTGAAGTCAGTCGGATCATCATTCAC
AACTTTCCAGTACTTTTCCAATTCCGGTAAAACTTTCTTTTTAGGTTTTTCATCAACTGA
AGGTCTCTTTTCGGCAGGTATGGGCTTGCTTTCGCCGTTCTTGGTAATAGCTTGTTTTTT
TGTGGAAGATTCACCTTCTGATGTTGGTGATCCTGGATCATAATTACTTCTCTCTTCATC
TGGTTTTCGTTTTCTAGACTCTTTCTTGGATGCAGGTAGCTCATCTTCTGATACAACCTC
TGTATCAGCAGGCAGTTCTGCAGGTTTCGGCCCCGGCAACTCATCATCAGATACATTCTC
AGCATCTTTGATGCTCGGCTTTTGCACTTCAGGAAGTTCATCCTCTGATACTACTTCTGT
TTCTTCAGCACCACCAATCTTACTTGCTGAGTCTTGTGATTGTTCTTTGATATCATCTAC
TTCTCTTTGGTTTTTAAACTCTTTGCCTTCATCCTGCTTAATCACTGGATCTTTTACTGG
ACTGCTACATGGCTCAACAATTTCCAATTGCTCTGATTTATCCACATTTAAATTTACATG
CTCAGTGGCGAAGTTAGAGTCATTGCCAGAGTTTTCATTTATCTCTCCTACATTGGAATC
TGTTGCATGTTGACTTTCAGACTGCCTACTGTCTGTGTCTAAAACTGCTTTGTGGGATGC
AGAGTCACTTTGAATAGAATTATCTTCAGTCAATGCGCTATTTAGAGAATCATTGGGAAA
AGTTACAGCATTATCACCAATGTCAAAAGAATCTGTACTGAAGCGAGGGCCGTTGTTTTC
GAGGTAGTCACCAGCGCTTCCAGCTGATAATTCCACGGCGTTCAAGAAACATTGATTAGA
TGTCGACGACTCATCAACAGCAGCATCGACACTATTAAATTCGCCCTCTGTTAACAAATG
AGAAAGTCCGTTGGAGTTCTCATTTATCAAAGGACCTTCGTCTGTATCCATGGGATTTTC
AGATCCTTTCTGATTATCGGAGCTTGTTTCATCTTCCATGTTTCAAGTTTAGAAATCTGG
TAGAACGAGATATATCGATCAAACACTACAATCTAAGCGAAACAGCTATAGTAGTAGTTT
GAGTTGGAAAAGTATTTAGTCGCTACGTTTTATTTCGTATTTGGACGCAATTTGCTTTAG
TTTATCGCTTTTTGAGCTTTT
(3321 bp)

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