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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40646_c0_seq3
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X3_[Papilio_xuthus]
Ontology
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:0.92 TPM:0.72
ORF EntryO_BomoMG19695_3prime_partial:A_BomoMG_comp40646_c0_seq3
Sequence
(Nucleotide)
GGTGGTACCTACCATAAAGTCGAAATCTTAATTCTATGTAACAGTTGTTCCGAGCAGCCC
ACCGGCTCCGCGTGGGCAGCAGTGGGCAGCAGTGGGCGGCGGTGAGATACAATGCGATAG
TTACGACATGGTCGACGGGCTCGTCCTCCCCGGGCGGCAGGTCGAGGCTGGGCTGCGCGC
CGGCCGCGTCCCGCACCTCGCCCCGCAGCCGCACCAGCTCCGCGTGGCTCACCACGCCGG
TCACCGGCTCCGACATCACGTGCTCCTGGAAATTGTCGAAGTGTGACGTGTACCCTAAGG
TGGGTGTTGCCAAAAGACGATCGTAGATATTCGTGACATTGAGAGCGGAACCATTTTCCG
CTTCCCATTTGATGTAAGACTCCCAAAGACGATCCGAGCGAAATTCTAGTCCGCATGCAT
CTATGGCTCGTTCATACTGAGATCTGATGTACGCATGGTCTTCGGTTTTAGTCGCTTTTA
TATGATTGAGGTAATGTATCCAGAGGTCTACGGATAAAGGTATAGCTTTAAGTCCCCTTT
CCAAAACCTCTAAGCACTTCTTTTTACTTCCTTTACGTTTTTCATAATCTGCAAACTTTC
TCCAATATCCATAGCAATAAGGATAGTGGGATAAAAAGGCGTCATAGGCTTCACGTGCAG
CTTCAACATCGCTCTCTTGATCGACATATTGTAATAGGTAGGTCCACCCAGTGAAGTCAG
TCGGATCATCATTCACAACTTTCCAGTACTTTTCCAATTCCGGTAAAACTTTCTTTTTAG
GTTTTTCATCAACTGAAGGTCTCTTTTCGGCAGGTATGGGCTTGCTTTCGCCGTTCTTGG
TAATAGCTTGTTTTTTTGTGGAAGATTCACCTTCTGATGTTGGTGATCCTGGATCATAAT
TACTTCTCTCTTCATCTGGTTTTCGTTTTCTAGACTCTTTCTTGGATGCAGGTAGCTCAT
CTTCTGATACAACCTCTGTATCAGCAGGCAGTTCTGCAGGTTTCGGCCCCGGCAACTCAT
CATCAGATACATTCTCAGCATCTTTGATGCTCGGCTTTTGCACTTCAGGAAGTTCATCCT
CTGATACTACTTCTGTTTCTTCAGCACCACCAATCTTACTTGCTGAGTCTTGTGATTGTT
CTTTGATATCATCTACTTCTCTTTGGTTTTTAAACTCTTTGCCTTCATCCTGCTTAATCA
CTGGATCTTTTACTGGACTGCTACATGGCTCAACAATTTCCAATTGCTCTGATTTATCCA
CATTTAAATTTACATGCTCAGTGGCGAAGTTAGAGTCATTGCCAGAGTTTTCATTTATCT
CTCCTACATTGGAATCTGTTGCATGTTGACTTTCAGACTGCCTACTGTCTGTGTCTAAAA
CTGCTTTGTGGGATGCAGAGTCACTTTGAATAGAATTATCTTCAGTCAATGCGCTATTTA
GAGAATCATTGGGAAAAGTTACAGCATTATCACCAATGTCAAAAGAATCTGTACTGAAGC
GAGGGCCGTTGTTTTCGAGGTAGTCACCAGCGCTTCCAGCTGATAATTCCACGGCGTTCA
AGAAACATTGATTAGATGTCGACGACTCATCAACAGCAGCATCGACACTATTAAATTCGC
CCTCTGTTAACAAATGAGAAAGTCCGTTGGAGTTCTCATTTATCAAAGGACCTTCGTCTG
TATCCATGGGATTTTCAGATCCTTTCTGATTATCGGAGCTTGTTTCATCTTCCATGTTTC
AAGTTTAGAAATCTGGTAGAACGAGATATATCGATCAAACACTACAATCTAAGCGAAACA
GCTATAGTAGTAGTTTGAGTTGGAAAAGTATTTAGTCGCTACGTTTTATTTCGTATTTGG
ACGCAATTTGCTTTAGTTTATCGCTTTTTGAGCTTTT
(1897 bp)

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