SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40646_c0_seq2
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Papilio_polytes]
Ontology
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:1.68 TPM:1.33
ORF EntryO_BomoMG19692_complete:A_BomoMG_comp40646_c0_seq2
Sequence
(Nucleotide)
CAAGCATTGTCGTGGACACAACAATACTATGATAGCAAGGGAATATTCAATAGCATTATA
TCATAATATTTTTCATTCAATTTTTCAAAATAGAGGAAGCGAGAGGTCGGGTACGTGTCG
CCTATTTGTTCGAAGCAATAAATACACCAATGTAACGCAACATCTCACTTTATCTATTTA
AAATAAAATGTTTGTTCGGGCATATTACACCTGTTCGTAATGGACGCTGCCGGGCTCGCT
GTCTTCGCCGTGATCTTCGAAATGGCTAAATATGGAGAACCGCTGTGATCCACGCTAGTG
TGCTTTCATGGATTAGTTTCATCTTAATTATCCATAAATCATTATGTACTTAGTTATATA
TACAATAAAGTATGTATTACAATACATCATGCATGTACAAGTTGTATTAAACTTAAGCAC
TAGAATACAAACAATACACCTTATCGTAAGTATAATTAAAACAATATCTATGTGACGGTT
ATACAACTCTCCGGTGTGACCTGACGTCTTTCGTATACGAACATCGTAGACCTCGTTGCA
CTCTAAGCACTTCTTTTTACTTCCTTTACGTTTTTCATAATCTGCAAACTTTCTCCAATA
TCCATAGCAATAAGGATAGTGGGATAAAAAGGCGTCATAGGCTTCACGTGCAGCTTCAAC
ATCGCTCTCTTGATCGACATATTGTAATAGGTAGGTCCACCCAGTGAAGTCAGTCGGATC
ATCATTCACAACTTTCCAGTACTTTTCCAATTCCGGTAAAACTTTCTTTTTAGGTTTTTC
ATCAACTGAAGGTCTCTTTTCGGCAGGTATGGGCTTGCTTTCGCCGTTCTTGGTAATAGC
TTGTTTTTTTGTGGAAGATTCACCTTCTGATGTTGGTGATCCTGGATCATAATTACTTCT
CTCTTCATCTGGTTTTCGTTTTCTAGACTCTTTCTTGGATGCAGGTAGCTCATCTTCTGA
TACAACCTCTGTATCAGCAGGCAGTTCTGCAGGTTTCGGCCCCGGCAACTCATCATCAGA
TACATTCTCAGCATCTTTGATGCTCGGCTTTTGCACTTCAGGAAGTTCATCCTCTGATAC
TACTTCTGTTTCTTCAGCACCACCAATCTTACTTGCTGAGTCTTGTGATTGTTCTTTGAT
ATCATCTACTTCTCTTTGGTTTTTAAACTCTTTGCCTTCATCCTGCTTAATCACTGGATC
TTTTACTGGACTGCTACATGGCTCAACAATTTCCAATTGCTCTGATTTATCCACATTTAA
ATTTACATGCTCAGTGGCGAAGTTAGAGTCATTGCCAGAGTTTTCATTTATCTCTCCTAC
ATTGGAATCTGTTGCATGTTGACTTTCAGACTGCCTACTGTCTGTGTCTAAAACTGCTTT
GTGGGATGCAGAGTCACTTTGAATAGAATTATCTTCAGTCAATGCGCTATTTAGAGAATC
ATTGGGAAAAGTTACAGCATTATCACCAATGTCAAAAGAATCTGTACTGAAGCGAGGGCC
GTTGTTTTCGAGGTAGTCACCAGCGCTTCCAGCTGATAATTCCACGGCGTTCAAGAAACA
TTGATTAGATGTCGACGACTCATCAACAGCAGCATCGACACTATTAAATTCGCCCTCTGT
TAACAAATGAGAAAGTCCGTTGGAGTTCTCATTTATCAAAGGACCTTCGTCTGTATCCAT
GGGATTTTCAGATCCTTTCTGATTATCGGAGCTTGTTTCATCTTCCATGTTTCAAGTTTA
GAAATCTGGTAGAACGAGATATATCGATCAAACACTACAATCTAAGCGAAACAGCTATAG
TAGTAGTTTGAGTTGGAAAAGTATTTAGTCGCTACGTTTTATTTCGTATTTGGACGCAAT
TTGCTTTAGTTTATCGCTTTTTGAGCTTTT
(1890 bp)

- SilkBase 1999-2023 -