SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40627_c0_seq4
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_steroid_hormone_receptor_ERR1_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001892 P embryonic placenta development
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0003713 F transcription coactivator activity
GO:0004879 F nuclear receptor activity
GO:0005496 F steroid binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0030522 P intracellular receptor signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
Transcript
Level		FPKM:2.32 TPM:1.83
ORF EntryO_BomoMG19517_complete:A_BomoMG_comp40627_c0_seq4
Sequence
(Nucleotide)
GGGGACTCGTGTACTGAACGTCGCGACGCGCAGTACTTTCGCGCCAGATCACCTGAACTT
TTCAAATAATCTAGACATATAAAAACAAGCCGAGATGGACTGGATGGAGATGGAGGATAT
GGTGCACATGATGTCCGCAGTCAGTGGGGAGCCCATGCTACGCCGCGTCAAACAGGAAAC
GGATCCGTCGCCGCAGTACTCGCCCCCCGAGCCGCAGCCCCCACACCCCCAGCCGCTGCA
CCCCCGACCGATGCCCTTGATGCAGCCGGAGTTGGAACTCGAGACTAAGGACGTGAAGTT
CTGCGTTTCGCCCGAGGACGGCACGATCGTGGGCAACACCAGCCCTGAGCAGCAGCACTG
TTCGTCGACAACCGCGGCCGCCGCCAGCGGCAACCGGGACGAGGACACGCCGCGCAGGCG
GTGCCTCGTCTGCGGGGACGTCGCCTCCGGCTTCCACTACGGAGTAGCCAGCTGCGAGGC
TTGCAAGGCGTTCTTCAAGAGGACCATACAGGGCAACATCGACTACACTTGTCCGGCGGC
GAATGAGTGCGAGATCAACAAGCGGCGGCGCAAGGCGTGCCAGGCGTGCCGCTTCCGCAA
GTGCTTGCGCACCGGGATGCTGCGCGAGGGCGTGCGCCTGGACCGCGTGCGCGGCGGCCG
CCAGAAGTACCGCCGCGCGCCCGAGCAGGCCCAGCCCAGGGTGCAGCTCGACGACATCAA
GGTGCTGGAGGCGCTGCTCTCGTACGAGCCGGAGCCGTTCGCGTGCTCGGCGGCGCCCCC
CGGCGTGACGGAGCCGGCCGCGCGGACGCTGGCGCTGCTCGCCGACCTGTACGACCGGGA
GCTGGTCGAGATCATCGGCTGGGCCAAGCAGATACCCGGCTTCACGGACCTGCAGCTCAA
CGATCAGATGCGCTTGTTACAAAGCACTTGGGCCGAGATGCTGAGTCTCATGGTGGCGTA
CCGCTCGATGTCCAGCGGCGCCAACCTCAAGCTGCGGTTCGCTTCGGACCTCACGCTGGA
CGAGCAGGAGGCCCGCGACATCGGGGCCACCGATCTGTTTCTACAGGTGTCGGGCGTGGT
GCGGCGGCTGGAGCGCGCGGGCGCCGTGCGCGAGGAGTGCGTGCTGCTGAAGGCGCTGGT
GCTGGCCAACTCGGAGGCGCGCCTCGACGAGCACCTCACGCTGCGCCGCTTCCGCGAGCA
GATCCTGCAGGCGCTCAACGAGGCCGTCGCCGTGCTGCGGCCGTACGGCGCCAACCCCGC
GCTGCAGCAGCTGCTGCTGGTGCTGCCGGCGCTGCGCCACGCGGACGTGGCCGTGCGCCG
CTTCTGGGCCGCCGTGCACCGCGACCGCCGCGCGCCCATGAACAAGCTCTTCGTCGAGAT
GCTCGAGGCCTGTCTGCGGTAAGCCGAGCCCGACCTCCGTGCGCGACGACTGTTAATCAT
CAATGCTCCGCGCCTGCCGACCGTCTATATAACACACCCGGGAGCCACATAAGCAAACAG
GCGGAATCCTAAAACGCTATCAACAACTCGTTGATATTAATAAATTACAATTAATCACTT
GAATAAACATTATCAGAGGTTTTTTTTTGGAGGTAACCGCTATAAATATCTCTTATTATT
GACATTCAAATTGATGAGTAACAGTTGTTTGTTTAACGAACGGTTCGATGGCACGGTCCT
CCCAGTCAGCGCCGGGCCGCGACGCGGAAGCGATACAAACGTCATCACAAATCCACATAT
CACGCGACGCGTTCGCCCCTCCCCCTTTTCCCCCGCCCCCAATCCTTTAGTTCGCATTTA
ACCCCATCCCGTCCCCCCTCGGTCCCGCCCGATACCGATCCCTTTAAGGCTCGTTTACAC
AAGGCGAAACCGAAGCTCGTCGAGTTCGTTTGAACCAAGCAGGAATGCGGAGGAAGGGGC
CTTGTGTAAATCCGCCGTTAGTCTGTAGTTTATGGCTGTGATGTGTACGTAGTGCTGTGA
CGTCACGGGCGGCCGCGGGCCCGGCGTCGTCGATGTACAAAATGATGGACGATACTAGTA
CAAAAAAAAAAACTTGTTACTATTTTTGTATAATATTAAAAAATATATTTCTAGATTTTA
GTGTGCGAATCTACGAGATTATTGCGTTGTATGGTCGCGGGGATAATGTACCTTTGAGTT
GGTGTTTACTGTTTGTTGATTAAACATGAACAAATGAAAAAAAAAAAAAATTATATTGTA
TTAGAATTGATATCTTGTACAAATTGAAAGGTTTATTAAGTAAAGATTTTTCTATTGTCA
AAAAATAAAAAATATCTAGGTTGTTATTTGAAATGATTTTGGTGCTCTCAATAAAAAAAA
AAAAAACTTATCGTATGTAACCTATCTATGATTTTGGAATCAAACGTTACTCGAGTCGAT
AGAATTGTGCGACAAGTCTAGACTTCGTGAATGCTTTAAAAGTTTTAGCCTAAATATTTC
AGAACTTAGTTCCGTTCTCCTCATAGTGTAAAGGTTGCGTTCTTTCAACTAGATAAAGGT
TATTTTTAAACGATTATTTTTAATCGATTAAACCTCCGGCCAATGTTGAGTAATAAAAGA
TTATTGACAGAACATCATAAATTTATATATGTTTAAATGTATATTAAGGCGGGATTATTG
TTAGTGAAATGATACCTTAACTACATCATTGTATAATTTAATAATAAAATGTGTTGCTGA
ATTTAGTACAAAATCGATTGAAAATATCGATATTTATATTTAAGAATCGATATTGTTTCC
CCGACCGTACTCAGCAGGATTTGATTTCTCGTCATGGGCCGTATTCGGCGCATTTATGTT
ACAGCGTTTTTTCTTGTTTTTTTTTTCAAATACATGATGTACATCTTCTAACATGCTCTA
TCGGAAACATGGCAACGTCACTATCGAAAACTTGCATATATCGATAAAAATCATCGACTT
AGTTTGCATCAAATAAAACGAATGATAGCAAGGAATAGATGATTTAAAGTTAGTAGCTTT
TTTTTTTAATTACTATTCTTAACTTCAAAGTAGCACAAAAGATTAAAACAATAAAAAAAT
ACAAACCAAACTTTGAGCCGAAACAATTAAAATTCTCTATCGATCGAATTAATTGGGAAT
TGCAATTTTGTAAGGTTAGACTTGGTCATTCTCAAAATTTAAAAGTAAAAATCAAGACTT
TGGTTATTGCAATAAACAACATATTGACATTGCCACAAGTTCCGCTGTCAGTCAAAATGT
TAAATTCGAAATCTAATTAGTCTATATATTTCGTATCGCTGTTCCGCTAATCTGTAAAAT
AAATTTATTGACGGAGTAATTTATATTATTGTAAAGATGGTACAAAAGAAAAAAGCTAAA
AAAATAAAACAATAATGCTGTTTAAAAATGCTAAATTTAAATTTTATATACATATTTATT
TAAAAACTGAGTGTTGTGTTAGTGGGACAGTATTTATGTAGAATATTTCTTAATTAGGTT
TTATAATCGCTGAGGAACACACGTATGATAATAATAGTATATTAACCTATACATATAAAT
AAAATTGGAG
(3550 bp)

- SilkBase 1999-2023 -