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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40619_c1_seq3
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_isoform_X1_[Papilio_xuthus]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:8.69 TPM:6.87
ORF EntryO_BomoMG19469_3prime_partial:A_BomoMG_comp40619_c1_seq3
Sequence
(Nucleotide)
CCTCCGATGTAAAGCGTATTGTAAATTTTCCAATAAACGTCGCGTACTTTCCTCGCTGGA
TGGAACAGGCCCTGTAATGCATATTGAAGTATTTTAATGGGACCTAGGGCAACTCGCATG
CCCTCAACAGCGTCCATGAAGGCTTGCACCAGATGCGGTGATGTCTCAAAAATATTTGGC
CAAACATGATTTAATAGATGTACTAAGGCATCTTCACAGCCGAAACCATACACGCCGAGC
GACATATGTTTTATGGCAGCGCAAGCCGTTTGTCTGTGTACTAAATCTCGATCCATAAGC
GCGTCTTCCAATAATGGGCAAACTGCATAAATGTAATCCTTGCCCATTTCTCCAATGTAC
TCGAAAAGGAAAGATAGTGATTTGAGCACACCGTTTTGAACATTTAATTCCGGTACTCTG
TATTCATTCATTAAAGCAGGTAGCACTGTGAAAGGTGAACAGGTCTCTGCAACTATAGCA
ATAGCGACCGTTGTGCACACTCTGTTCTGTCTCTCTTGCACTTTCAGATTGTTAAGTAAG
GTTGCGAGTACGTCATGAGGACCGATGGCTTTAGCAATATAACCAAAGGTATTTACAGTC
GCTCGTCTAATTGCCTTCTTATGAGCCTTTAATAGTTCAAGCAATTCAAAACATATTCTC
ATCCATTCTCTGGCCGACACAAATTCCGGTCCTCTGTCTGCAATACGACCCACTAAATCA
ATACAATTCTCTTGTACTTTTTCATGCCTGTTTTTCAAAATGGGTGTAAGCCTAGGCAGG
AGATCCTTTATTGGTGGGGTCATCTTTGTCATTCCAATAACATTGACAATTGCTTTTAAT
GCACCAAGTATAGAGCCTAGCACTTCAGGATATTCCTCTCCCAAGTACTCATACAGTACA
ACACCAAGATGCCCCATTAACTTTTCCTCCTGACAAGTTTTCATCACGACAGCGATCCGA
GAAATGAGATCGGCAGCTTGTTGCCGAACTTTAGCAGACTTGTTGTTCATACGCCAAAGA
ATAATACCACATATCTGTGGTAAATAGGGCTTTACGCGTTTTCCCAATTGATTCACGATT
GTTCCAAAACCGTTCAGCATCACAACATCCTCAGTTGTCTGTTCTTGGAATGCATACAAT
ATTCCATCGATAAGAGCTTCTTCGAGCTTAGAATCAATGTCTGCTGCTCCTAAATTAGCG
AGAATCTTTTCAATGGACTCCATCACCATTTTTCTATACTGCTCATTGTCGTCTTTTAGA
TCATCAACAATTCTGTTGATAATTTCTGATGCACCGACCTTGTTTGCAATTTCCACTGTG
GTGTCGACAAGCTGGCGATAGTTTCGTCTGTCGAGGGCCATACGATGGTTCCAGAAGTGT
TTAAAGAAATGAGGCAATATTTCATCCATTATGTATTGAGGCTCAACACCGTCGGTACCG
CAACATTGTTTTACTACTTTTAAGACGATTTTTTTCATTTCTTCATCGGGCGACTGGAAC
TCACGAATAAGAATTAGCATCACTTCTCGTGTGTAGTAATTCGCGTATTCTGCATCCATG
AGAGGGATGAGGTATCCGATGGCTTTCAGGAATGCAGCCAGACCTTTACCACGATGCGTA
CGAATACCTTTCCACAGAGGTTTGAGCACGGAATCGAAGGACTCGATACCGTAGGGCGTG
GCGGCCTCGGCCAGAGCCGCGCTCGCCAGCGCCGTGATCGTTCGGACCTTCTGTTGTTCG
TCCACCAGACCATGTTCAATAATTTCAACAAGAGATTTCAAATGTGGCAGAATAGCACAG
CCCATCAGAATAGCAATTTGTTGCACAATCTTTATTCCTGTGTGACGTGCTTGCCAGGAT
TTCTTAGATCTGCACACAGCTTTTAAAAATGGCAATAAAGATGGAATACCCAAGGCCGAT
GCCACTACCGCAAACGCTCGAGCGGTTGTGTTTCGTACATACTCATCTATGTTGTCTATA
TCAGGCCTCATTGTAGAAATCATAGTAGCCAAGCCGGCTGCTTTAGCTAAATTTGAAATG
ATCTCGCGACCTTCGACACGCGCATAATAATCTTCATCAATAAGCAGAGGTTCAATGACG
ACAAGAATCTTATGTACGTAGGGTCGAACCAAGTCGTCTAATTTATACAAAATCCTGTCT
ATGACTTTGACCAGTAGATGTCTCTCTTGATCTTCCAGCGTAGGACTCATCAGTAATGGC
AGAATTTGATTGAAAAGTGGTCCAGCACCGAATTCGCGAGCTTTATCTGTTATTTGTCGT
AAGGCAGCTTTGCACATGGGTGGCGTACCGTTCTTTATTTTCAAAAGAAGCTTCATTATT
TTCCGTTCCTTAAGTTCGTCGGGAGAGAGTGTATCCTCGTCGACGTCGATGAGAAGTTTG
TCGAAGTACTGGGCGTCCTCGGGCTTCATAAAGGGCAGCTGCTGGTTACCCTTGGGCTGA
GGGTCGAGAAGACGCGCGGCCGCCGCGGCCGAGCCGCCCGGCTCCTCCGTCTGCATGAAA
AACCCGATTGGAGTACCACCCAACGGCGTGGGCGTCGCCGTCAGCTTGCGGGCCGGCGTC
CGAATCGGGACGTACCCGGCAGGCGGTGGTAAAACCTTGTACCCAGGAGGGAACATGGCA
TCCAGTTCTTCATCAGTGTAAGGTCTATTACGCTCGTCTATTTCTTTCTCCCAACGATAA
GCTTGTAACTGTTCTGGAGTCATGGCTGCAACATGACCAGGTGTTGGTGTAGCCAGTGCC
ATGGCTTTCACTCCCACAGGTGTAGACCCTCCTGGCGTGAAGACAGGCGTGTGCGGCGTC
GGTGTAGAGAGCGATGGCGTGGCGTGCGAGGGTGTGGCATGGGAAGGCGTGGCGTGAGAA
GGCGTGGGGGTGGCGGGTGCGGGCGTGGCACCGGGGGTTTCGTCCCAACGCGAGCGCCGC
TTTGTGCCAGGGGTGGGGGTCTCCTGTATTGTATCCACGCCTGACCCGCGATCTGTTCGT
GGTGTCTCAGCCCAACCGCTGTTGTGTCCTGGTGTTTCTCTATCTGTTTTTGGTGTTTCA
TCCCAGCGATTTCTGCGAGAAGCGTGATGAGCCGGAGTTTCGCGCCCCGGAGTGGCGTGT
CCAGGAGTGATATGTCCTGGTGTGGCATCCCAAACACGTGCCGATGGCGTGGCACCGGGC
GTCTCGCCGCCCCGACCTGCTCCCGGAGTTTCTTCCCATGTGCCTCTCTCAGCATCCCAA
GACGGAGTTGTCTGTGAGCTTGGTGTAGTTGATACTGTTTTCTTAACAACTGGTGTTTCT
TCAGAACTTTGATCCCATCTACCTTTGCGTTTTGCTGCTGGTTTTATGGATTCTCCATTA
GATTGTGGTACTGGTTTGAGAGTTCCTTCCCTAGCTTTCTCTAACAGTTTCTTTCTGAGT
TCTGTTTCTTCAGCAAGAAGATACTGCTCTTTCATTATATCAGTGTATGTCCTCGATCCG
ACATCAGGAGTTTTCCCACCTTCTGCAAAAGGATCATTTCTTTCAGGTGATATAATCATC
CTGCGCCTCTTTTGTCGATATTCATCCTCTCTATCAGCGATAGTTGGTCTTCGTTTGTCA
GCAAAAGGATCGAATTCTTTATCACTTTGTGCAATGTCATTCAACAGTGAAGCAGGTGCT
GTATATCCTGGCCTTTTCTGAGTTATAGGAACATTTTCGAGGTCATCATCTTCTACTTCG
TCATTAGCAGCAATTGATGTCACATATCCGTCATATCTGGACTTGCCTCCTTGGCCTGTG
CTATCATATATATCGCTGTCATAGTAAGTCTCGCCGAGAGACACGCCTTTGTTGGAACCA
TTTTCTGGTGCTTCAGTTTTTTTTGATTGTATTTCTTTTATTTGTGCTTCAATGGCTTCA
TGAGTTCTTGGTATTTTATCCATTTTTAGAAGATTGTAGACATTTATGCAACTTTACGGA
CAATGAAATCAAATTATTTTCTCTTCTATCGATGATTTATTAGATAGGTAGCGTGAGTTT
TTTTCGTAAACACAGACTATGTCCGATTTTATGCATAGGTAGTTACATACTACCTCTTCC
TAACCTATGGAAAATGAACTCCATTTCTCATAGAAAACTGTTTGGACTTTTAGGCGGAAA
CGCGGGGAGTGAAGTTGCG
(4159 bp)

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