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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40619_c1_seq1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0001825 P blastocyst formation
GO:0003682 F chromatin binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009952 P anterior/posterior pattern specification
GO:0016363 C nuclear matrix
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:5.02 TPM:3.97
ORF EntryO_BomoMG19468_3prime_partial:A_BomoMG_comp40619_c1_seq1
Sequence
(Nucleotide)
CCTCCGATGTAAAGCGTATTGTAAATTTTCCAATAAACGTCGCGTACTTTCCTCGCTGGA
TGGAACAGGCCCTGTAATGCATATTGAAGTATTTTAATGGGACCTAGGGCAACTCGCATG
CCCTCAACAGCGTCCATGAAGGCTTGCACCAGATGCGGTGATGTCTCAAAAATATTTGGC
CAAACATGATTTAATAGATGTACTAAGGCATCTTCACAGCCGAAACCATACACGCCGAGC
GACATATGTTTTATGGCAGCGCAAGCCGTTTGTCTGTGTACTAAATCTCGATCCATAAGC
GCGTCTTCCAATAATGGGCAAACTGCATAAATGTAATCCTTGCCCATTTCTCCAATGTAC
TCGAAAAGGAAAGATAGTGATTTGAGCACACCGTTTTGAACATTTAATTCCGGTACTCTG
TATTCATTCATTAAAGCAGGTAGCACTGTGAAAGGTGAACAGGTCTCTGCAACTATAGCA
ATAGCGACCGTTGTGCACACTCTGTTCTGTCTCTCTTGCACTTTCAGATTGTTAAGTAAG
GTTGCGAGTACGTCATGAGGACCGATGGCTTTAGCAATATAACCAAAGGTATTTACAGTC
GCTCGTCTAATTGCCTTCTTATGAGCCTTTAATAGTTCAAGCAATTCAAAACATATTCTC
ATCCATTCTCTGGCCGACACAAATTCCGGTCCTCTGTCTGCAATACGACCCACTAAATCA
ATACAATTCTCTTGTACTTTTTCATGCCTGTTTTTCAAAATGGGTGTAAGCCTAGGCAGG
AGATCCTTTATTGGTGGGGTCATCTTTGTCATTCCAATAACATTGACAATTGCTTTTAAT
GCACCAAGTATAGAGCCTAGCACTTCAGGATATTCCTCTCCCAAGTACTCATACAGTACA
ACACCAAGATGCCCCATTAACTTTTCCTCCTGACAAGTTTTCATCACGACAGCGATCCGA
GAAATGAGATCGGCAGCTTGTTGCCGAACTTTAGCAGACTTGTTGTTCATACGCCAAAGA
ATAATACCACATATCTGTGGTAAATAGGGCTTTACGCGTTTTCCCAATTGATTCACGATT
GTTCCAAAACCGTTCAGCATCACAACATCCTCAGTTGTCTGTTCTTGGAATGCATACAAT
ATTCCATCGATAAGAGCTTCTTCGAGCTTAGAATCAATGTCTGCTGCTCCTAAATTAGCG
AGAATCTTTTCAATGGACTCCATCACCATTTTTCTATACTGCTCATTGTCGTCTTTTAGA
TCATCAACAATTCTGTTGATAATTTCTGATGCACCGACCTTGTTTGCAATTTCCACTGTG
GTGTCGACAAGCTGGCGATAGTTTCGTCTGTCGAGGGCCATACGATGGTTCCAGAAGTGT
TTAAAGAAATGAGGCAATATTTCATCCATTATGTATTGAGGCTCAACACCGTCGGTACCG
CAACATTGTTTTACTACTTTTAAGACGATTTTTTTCATTTCTTCATCGGGCGACTGGAAC
TCACGAATAAGAATTAGCATCACTTCTCGTGTGTAGTAATTCGCGTATTCTGCATCCATG
AGAGGGATGAGGTATCCGATGGCTTTCAGGAATGCAGCCAGACCTTTACCACGATGCGTA
CGAATACCTTTCCACAGAGGTTTGAGCACGGAATCGAAGGACTCGATACCGTAGGGCGTG
GCGGCCTCGGCCAGAGCCGCGCTCGCCAGCGCCGTGATCGTTCGGACCTTCTGTTGTTCG
TCCACCAGACCATGTTCAATAATTTCAACAAGAGATTTCAAATGTGGCAGAATAGCACAG
CCCATCAGAATAGCAATTTGTTGCACAATCTTTATTCCTGTGTGACGTGCTTGCCAGGAT
TTCTTAGATCTGCACACAGCTTTTAAAAATGGCAATAAAGATGGAATACCCAAGGCCGAT
GCCACTACCGCAAACGCTCGAGCGGTTGTGTTTCGTACATACTCATCTATGTTGTCTATA
TCAGGCCTCATTGTAGAAATCATAGTAGCCAAGCCGGCTGCTTTAGCTAAATTTGAAATG
ATCTCGCGACCTTCGACACGCGCATAATAATCTTCATCAATAAGCAGAGGTTCAATGACG
ACAAGAATCTTATGTACGTAGGGTCGAACCAAGTCGTCTAATTTATACAAAATCCTGTCT
ATGACTTTGACCAGTAGATGTCTCTCTTGATCTTCCAGCGTAGGACTCATCAGTAATGGC
AGAATTTGATTGAAAAGTGGTCCAGCACCGAATTCGCGAGCTTTATCTGTTATTTGTCGT
AAGGCAGCTTTGCACATGGGTGGCGTACCGTTCTTTATTTTCAAAAGAAGCTTCATTATT
TTCCGTTCCTTAAGTTCGTCGGGAGAGAGTGTATCCTCGTCGACGTCGATGAGAAGTTTG
TCGAAGTACTGGGCGTCCTCGGGCTTCATAAAGGGCAGCTGCTGGTTACCCTTGGGCTGA
GGGTCGAGAAGACGCGCGGCCGCCGCGGCCGAGCCGCCCGGCTCCTCCGTCTGCATGAAA
AACCCGATTGGAGTACCACCCAACGGCGTGGGCGTCGCCGTCAGCTTGCGGGCCGGCGTC
CGAATCGGGACGTACCCTGGGCAACAATACTTGCTATTAGGTTTTATTTTAAATTTACAA
TCGTAGATAGGCAGACGAGCTCAGGGCCCAGCTAATGTTAAGCGGTGACCGGAGCTTATA
TGCACCACAGTGTGAATGCCGCCGCCCATCTTGAG
(2735 bp)

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