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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40578_c0_seq4
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		Putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Papilio_xuthus]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0007067 P mitotic cell cycle
GO:0007419 P ventral cord development
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:8.99 TPM:7.10
ORF EntryO_BomoMG19218_3prime_partial:A_BomoMG_comp40578_c0_seq4
Sequence
(Nucleotide)
CAGGTCGGCGGCGAGCAGGCGGGCGGCGCGGCGCGAGCTCACGAACACTGCGCAGGGGCG
GGTGCCCGCGTGCCGCCGGATCGCGTTGTAGATGGGCTTCGTCATGGCCGTCAGCCGGGT
CGGCGCGTGCGATATGTTGAAGCCCTGGATGTGCAACTCTAGTGGGAGGGATCTGACGCT
AGGGTGGAAATTGAAGGTGGCATTCGCGTTGCAGCCGAGCCACTGGGCAACGTCGCGGGC
GTCGGCCAGCGGTAGCGACAGGGCCACTATACGGATCGGCTTCCCTGTCTGAGAGGCGAT
GTACCTCATCCTAGAGCAGACCACCTCCACGACCGGCCCCTCCTCGCCGCCCAGCAGCTG
CAGCGCGTCCGCGATCAGCAGCGACACGCTCTGGACGCTCTTGCGTACTTTCCATCTCCG
GGAGAGTATGTCCCACTTATCGGCCGTCGTTATGATGATCTGGCCTTTGTTGAGCAGCTT
GTGGTCCGTAGCAGTCTCGCCGGTCAGCTGGACCACCTTAAGATTGAACTTGGTCCCGAA
CTTGTGGTAGCAGTGCGCGAACACGATGTCCGCCAGCGCGTCCTTGGGCAGCAGGTACAC
GGCGCGCCCGCCCGCGTCCCGGGACAGCATCCGCAGCAGCGCCAGCTCCGCAACCAGCGA
CTTGCCCGAGCCCGACGGCGCACCCACGAACACGTTGTCGTCAGAGTTGTACACTGCGTT
GAACACCTGCGTCTGCACCGGGTTGAACTGCGGGAAGGTGTCGTTGTACAGCTCCTCGTA
CTTGGCATTCCGGAGTGCCGAGATGGGCAGCGGCTGCAGGTCCAGCAGCTCGGTCGGCGG
GAAGTTCTTCTCGGGCAGGATGAGGTGCCGGAACGACACCGGAAGCTGCGTCTCCGCTGC
TATCCATCTATCGGACACGACCCTCAGGAAGTACTGAGGAGGCAGGGGCTCGAAGACCGG
CACGAACAGCTTCACCTGGTGCTCGTCCTTGCAGTACTTCTGCTTGAGCAGGAAATACTC
GTGGTGGAGGATCACCTCAGAGTCCACGTCCTCCACCAGGATCCAGAACGCCTCCGACTG
TCCGTGGATTTTCTCGTCCCAATGGAAGTCCGGCGTGATGGTGAGCTCGACCCTGAGCGT
CGACCTGGTGATGGGCTGGATGTGCGTCGCGAGCTCCAGCTTCGGGAACTGGTGCACGTA
CTTGTGCAGCATCTTGCCCAGCTTCGGAGCGCGGACCAGCTCGCCGATCTCGTTGGGGCC
CAGCTCGTACAGCTTCTCCCACGGGAAGTTCTTCTTCTCGAGTTTCTTTATGACCTCTTC
GGGTATCTTCTTAAACTGTCTCAACGGCGACATGGACTGCCACATCCTTCTGTCCACCAT
CTTGCACAGCGCCAGTGTTTTGTCCACCAGCTGCGCCCAGCCTCTGTACAGTACAATCTC
GAAGATGGCCCTGAGCAGCCTGCAGGCGGACTGCGTGACGTACACCATGTCCGCCATCAG
CGCGAACCCCTCGAGCTTCAGCTGCGAGATGTACGCCTGCAGCAGCACGTTGATCTTCGC
CGAGGACTCCTCTATGCTCTCCTTTATAGGGATCGGCACCCTCTCCATGAGCTTATGCAG
CTCCAGCTTCTCCTCCTCGCGGACGGCGATGTGCTTGAACTCGGCGGAGAGCGAGAACAC
GCGGAACAGCTCGATCTCGCCGAGCGTCGGCTTCAGCAGCTGGTTGTACGACTGCATCGT
CTCGTACGTGCAGTAGAAGTGCGAGGCGATGCGGCCCAGCTCCGTCGGCTGGAAGTGGCC
GGACTTCTTCTCGTATTTGATCAGGCCGGCCTTGTCCAGTAGACTGGCGGCGGTGTGCAC
CAGGTCGGCACGGTGCAGTTCCAGCAGATTGTCGTCCTGCATCTTCTCCGGGGAGACTCC
GTACAGCGCCGGCTGCCTCAGCATGCGGATGTATAGATACGTGTAGCCCAGCCACGTGAC
GGCGTCCCGGACGCTCTGCACCGAGCCCAGCACGATCTCCGCGTTCAGCATGTCCGGCAA
CTTGCTCACCAGCTGCGACTCTATGGGCAGCTGCTGGTTCAGCAGCGACAGGTAGTACTG
CAGCTCCGAGTGGTTCGTTATCAGGATGCCTTCTCCCTTGGTGTCGTACTGCGGTCTCCC
GGCGCGGCCTAGCATCTGCAGCACGTCGAGCGCGCCCAGCTCTGTCCAGCGGCCCTTCTC
GGGGCAGTACACCTGCGTGCCCTTCACGATGACGGTGTGCGCGGGCAGGTTCACGCCCCA
CGCTAAGGTCGCCGTCGACACCAGCACCTGTATGTGCCTATCAGCGAACAGATCCTCGAC
CAGCGTCCTGTCCACCCTGCTCATGCCGGCGTGATGTATGGCGAAGCTGTACGGCAGCAG
CTCCCGCAGCTCAGGGTTCTTGACCTGCTCGGCCTCAGTGCGCAGGACCTCCATACTAGC
CGACCCCTCTCTCAAAAAGTGTCCAAGCGTGTCCTTCTCGAGGCACATGTCGCGGATCGC
GCGCGCCGTCTTCCCGGTCTCCTTGCGCGAGTGGACGAACACTAATATCTGGTTCTTGCC
TGCGTGCTCCATCACCTTCTCGTAGACGATGTCGTTCATCACCTGGAACCGCTTGAGAGC
CTTCTTCTCCGTCACGCCGATGTACTGCTGCTCGAGGGCCACCGGTCTGAAGGAGTTGTC
GAAGTAGAAGAGTCCCTTCTCGGGTCGTACGCGCAGGAAGGTGGCCACGTCCGTGTAGTT
AGGCAGCGTGGCGGATAGGCCCACGAGCCGCACCTCCTCCCGAGTCTGCTCGACCGTCCG
CAGGGTCCGCGCCACCAGCGCCTCCAGCACGGGCCCGCGCTCGTCGTGCAACAAGTGGAC
CTCGTCTATGATTATAAGCCGGACCAGGTTCGTGAAGGAGCGCTCACCGCCCTTCCTGGT
GATGATGTCCCACTTCTCCGGAGTGCACACGATGAGCTGCGTGGCCTCGATCTGCTCCCT
CGTGAGCTGGTGGTCGCCGGTCAACTCGGAGACCTTCATGTTGTAAGCGGACAGACGCTT
GCTGAAGTTGCCCACCATTTCCTGCACGAGCGAGCGCATCGGCGCGACGTATATCATCTT
GAAGTCGTTGACATTGACAGTGCCGTCGTCGTTGACGTGCTTGCCGACCTCGCGAAGCAC
GCACAGCAGCGCCACGTTGGTCTTGCCGGCCCCGGTGGGCGCGCACACCAGCAGATTCTC
GTCCGACTCCAGCGCCGGCTTCGATATGCGGCTCTGTATTCTATTCAGGGTCTTGAATCC
CTCGAACGCTGGCTGGACGTATTTGGGCAGCTTCTCGATCGGCACTAGTGTCTCGTTTTC
TTCAAACGGCTTCGGTTTCAGAGCCGGCACGTGGACTTCTTCGTAACCTTTCCGCTGCTT
CCTGAATGAACCCGGTGGCAGCTGGCACCTCTTGTTGGCCATGAAGTGCGATCCAGCCGC
GAACACCAGGTCCTCGAGCTGCACCACCTTCCTAGAACCCGCTACCTGCCCAGATGTAGA
GCTGCTCTCGGCTTCAGATTTGTGCCTCTTTCGAGGGGCCTCAGAGTGAGTATCCATTTT
CTCATCATCTCCATTGCCGGTCTCCAATTGCGCGAGGATCTTCTGCAGGTGAGGCTGCCG
GGACATCTCCTCACGTATCGACACGCGCTCGCTCTCCGACTGGGAGGACGCCAGCTTCGT
GCAATACAGGATCATGAACCTGTACTTGTTCAATATCTTGACGAAGTCGAAGCAGTCGTA
ACCGAGCAGCAGGACCAGCCTGTTCTCCAGGTCTCTGTCGTCGGCAGCCTCGGCGAGCGC
CTTCAGCACGTCCGTGGATTTCGCCTGAGACAGCATAGCGTCAGGAAAATGTCTGGACAG
TCGTCTCTGCAGCCAGTAAGCATCTATATCCATCGGATGCAGAGACTGTGAGTGGCGTTT
GTTAATTTGCTCCTCGCTCAGATTAGTGTGAATGGCATTCCTCTTCCCCTCTGTATCACT
GTCCTCTTCTCCGCTGGATTCTTTTTCTTTCTCATTCTCTGACCCTTCACCATCTTCTTT
ATCTTCTTCTCTTACCTCCCCATATGCATCTTCATCATCTTCCTCAGAGGACTCTTCAAA
CTGCACATTGATGCCGTATGTCTCGTCTATTTCGGTGTTGCTCTCTGTTGCCGTGGTCAT
GTTGAAGTCTGTTATTTTCTTGCCTAAATTGACAAGTAAAGCAAATCTCTCGTCTGGTAT
GGAACCGAGGAGCATCTCAATTTCCTTCTTCTTCTCTGGATCTTTCAATTTATCGTTCTT
TAGAACTAAGAGTACCTCATCACAAGCGCCGCATAATATATCCCTTGGCTGGTCTCCGAG
AGAGCTCTGCATGAACGCAAGCAGTAGTTCATAGGTATGTCTAGTGTGTTGGGCTCTGGG
ACGGTATAGAACGCCTGGAGCATCATCAGCCCAAGCCACACGACTGGATTTTGATTTAGA
GAGTTCGTAGGAGGCTTCATCACGTTTTTGACGCTTAGCCTTTCTCTCCTCAGCTTTATC
TGGTTTAGTGCGTTGAGCTCGATCACCCATCTTAGTTCCTGTGAGCTTTCCAGACAGCGA
CAAAACTTCACCGGTCGCTTCATCTCGACCACGTCTCTCTATTAACCTTACATCAGCTTG
CAGTACAAGATTCGAGTTGGCCTTGTACTCATACTGCAGCTGTCTGGCAGCCGCGTCAGC
CATGCTTCACTATATACAAGAATGTAGCTTTACTCTTGTTATTTGACAAAAAATGCAGGA
AGGTATTTTAAATTCGAAATTACAATTTAAAATAACACAGTTTAAGGTTAGACCGCCGC
(4859 bp)

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