SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40576_c1_seq5
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0004672 F protein kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0031251 C PAN complex
GO:0044822 F RNA binding
Transcript
Level		FPKM:0.44 TPM:0.35
ORF EntryO_BomoMG19177_complete:A_BomoMG_comp40576_c1_seq5
Sequence
(Nucleotide)
CTGGTTGAAATTGAACCCTTAATAACGACATGTTGGGGTACTCTCATTGTCATGAATAAC
TGTGAATCGAAAAGAATCATAAATTAAGCAGACTGCACAGACGCACTGCAGTTTTGAAAT
TATGGATCCATCAATATTTCTACCATACGCACCGCCTAACGGGCTTCCACAAGAATCGAA
GCTAGTTACATACATGAGTCGCTCAACTTCGACGCCCACACGCTCTCTTAACCATGCTAT
AGGGAAGCTCACTTTGGATTCCTCACCACCAGGTGTTAAGAAGGTATTGGTGAGCGAATT
TATTCCGATGAACTACTATGTTCCGCCACCGAATATGCTTCCCCCAGAATCACCTGAGGG
TCCACCACCACCTCCTATACCAATGGCGAATGCTTCAACTGTCCATCAGGAGAACGTGGG
AGGAACTACCTATTTCTACTCGACCAATTCAGACAGCCTCAATACCACTAGCGGTCTTAA
TTCATCGGCTTCCATGGATTTCCACCAACCAGGTCCGTCTGAGCCATGTCTAAACGCAGT
AGGGCCGCCGATGGTGTCTCCGTATGCTTCGCAGATGTACGCTGGGGCCTTACCGCAGCC
AGGGCCGTCCACCAACAAACAAGGTCTAGCGGCGACTTTTTACAATCCCGAAACAATACG
GTCTGAGATCTACGACAGGAATGATGATGTTTATTTGCAGCCTGATCTCAATCAGTTTCC
AGATATACCGGACAGCGTGGACATGTACGCCGAGCTGGTACCCCTGGAGGGTGCCGTGAC
GCATTCGATGTCGACATCGTACCGCGCTACTAACCGTCAGAACGGTGATTATGTGGCTCT
AAGGAGGCTCCATTCTTACACGTCGCCGGCCTCCAAGCGTCTTGAAATGTGGAAGCAGAT
CGACCACCCGAACATTGTGCGTCTGGAAGAATATTTCAGCACCAAGGCTTTTAACGATAT
ATCACTGGTCCTGGTGTACCAGTATCATCCAGCCGCTGTGACTCTGATGAACAAGTATTT
GTCCGGAAACGGAAACAACTCCGCCGAGGGTGGAGCTGCTTATCATGATCCGTTCTCTTC
GGACCCGGATGCACCGCGTCCGTATACCCATCAGAAAAATGCCATGCTCCGTGCGGTCGC
ATGCGGTGCTTTGCTTCCGGAAGCTGTGTTGTGGAGTCTGCTCGTGCAACTGACGGCCGG
CTTGCGCGCCATACATACAGCCGGACTCGCCTGCAGGAGCCTGGAGCCGACCAAGGTGAT
CATGAACGGATGTCGAGTCCGAATTGCATGGTGCGGTGCTGCTGATGCTCTACACAGCAA
CACCAATGATGTAGTACAGGCTCAGCAAGACGATCTGACCGCTTTGGGCCGGCTGGCACT
GGCTCTAGCCTGTCGCACCATACATTGCGACAACCTCGCAGCGTCCATGGAACTCGTCGC
TAGGACCTACTCTGCGGATCTGAAGAACCTAATTCTGTATCTGCTGTCATCCTCGCCTGC
GCGTCGTTCCGTTATCGACCTTATGCCTATGATCGGAGCTAGGTTCTATACTCAGGTGGA
GGCACTGGAGAGACGCGCTGATGCGTTTGAAGATCAGCTGTCCCAGGAGATAGATAACGG
TCGTCTCCTCCGCATATTAATCAAGCTTGGCATTGTCAACGAGCGTCCAGAATTGAATCT
GGATCCTGCTTGGTCGGAGACCGGAGATCGCTACATGCTGAAGCTGTTCCGTGATTATCT
GTTCCATTCAGTGACGACTGACGGCCGTCCTTGGCTGGACCAAGCGCACCTAACGCACTG
CCTGAACCAGCTCGACGGAGGAACTGCTGCGAAGGTGGAGCTGATGTCTCGCGACGAGCA
AAGCGTCCTGGTCGTGTCCTACGCTGAGCTGAAGCACTGCCTCGACCAAGCCTTCGAGGA
GGTGATGCAAGCCTCCGAGCCCGATTCCTAGCTAGCACTGAACGCTGGGCCTATGTCTGT
GCCCGAGCCAGAGCCCGAGCCGGAATACGGCTCCGGCTACACCAATAGCATACCCATCAG
GCACGGCGACGACCTGGGCTACGTGACCAACGCGTACGGCTTCAGCTTTAGTTTCGGTTA
TATCAACGGGTTCAGCAGGGAGAACAACGTTCCAATAAACAATCAGTTTAATGAGCGCGA
CAACAACGGCGACGGCGGTAATGGCGACAACGGCGAATACTTCTTTGGCGGCCCAGGTAA
TGGCAACCGCTGCAGTTGCGGCCACGATTACGAATACATGGAGTAGTTCGCTAAAAAAAC
GTGACATTCTCGACTATATGTATTCATTCATATCCGTATATATATAATAATCAATTCAAT
GTTTGTTAGTCAGGTTGATGTATTACCACGTATTCGTATTCGGATTGTGTACCAGTAAAT
GTGCTGCGAGCACTGTTTACGTACTTAGGAAACATCGTCCCGATCAGGACTTGTACTTAC
GGACATTTGATTCTATGTTTGTCCAAGATAAGATTGAATTGGATTGCATCGTACTGGGCT
ATGTCCCTGTACGGGGTTCATTAGGAACCTTTTTCTCGAACAGAGGTTTTTTTTAAATCT
TATAATAATAAACATATATTAATCACACTGAAGATTTCAGATAGTTATTATAAACAAGTT
TAATCATTATATACTCCCTTTTGTGTGAACGCATTTTTATTCGTAGTATTTTTGTAGTAG
TACACATGTATGTTCTACACGTAATATACAGGATGTAATAGGACTTCCGGTGTCAATACA
CTACACCACATCTCGTTATTCGAAAACAGAATTAGGAATATAACCCGAAGGTTATATAGA
TTCAGTATTTCGTGATCCCGCAATGAATGCGTACAAAATTCGGGGTCAACAACCGCACCC
AGTATGCAACAAGCGATGGAACCTCGTCCAAGTCTCTTTCGCGGCGTCAGCCAATCACTT
ATTGTGTTATGTACGATCAGCACAGGGAACCCGAAGGTTATATAGATTCAGTATTTCGTG
ATCCCGCAATGAATGCGTACAAAATTCGGGGTCAACAACCGCACCCAGTATGCAACAAGC
GATGGAACCTCGTCCAAGTCTCTTTCGCGGCGTCAGCCAATCACTTATTGTGTTATGTAC
GATCAGCAGTAGAATTGCATGGGATAAATAATTTA
(3155 bp)

- SilkBase 1999-2023 -