SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40476_c1_seq3
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		PREDICTED:_Niemann-Pick_C1_protein_[Bombyx_mori]
Ontology
GO:0005319 F lipid transporter activity
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030301 P cholesterol transport
GO:0031902 C late endosome membrane
GO:0042632 P cholesterol homeostasis
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:10.35 TPM:8.18
ORF EntryO_BomoMG18423_complete:A_BomoMG_comp40476_c1_seq3
Sequence
(Nucleotide)
AACATATATTATAAATTATTTAATAATTATTAATGTATTAAATTATTAATGTATTAAACT
ATTAGTGCAAATAGTTTATATTTTGCACACATATAAATATTCTCCAAAGTGCTACCAACC
CTTTGAACTCATTAAAAAAAATCTATCAAAGTTCTCATTTTTAATAAGTAGCATTGCAGT
GAGCGACTTCGTTTTTTATTACTAATAAAACATTTTCTCTGAACGTTCAATAATAATAGT
TGCTCCAAAAGCTTCTAAATAATAATAATTTAATTAGTTAATTCATTTACCATTTTACTA
TTATATAATGTAAAATGTGTATTTCATAATTTAAATTGTAATATATACAAATGAAAATAA
TTAAAAATTTGAGACTTCAGAATTAATATTTGATCATTTGTTTAAAAGTTCCCAACCACG
ATATTGCATCAGACAACCACCAATATTCAATGTCTTAAACATTATTATTTCATAATTTAT
TTTGAAACGTATAAGAACATTACGGCGGAAGCAGATAGCGACACGTCACCAACAAATATC
AATAATAAATTATAATTATTATAGTTGACAGCAAAAAAAAAAAGAAAATAAATAGTAAAA
TTTCTTCATTAAAAAAATAAACGGCATGCATATTAATTATAGAAAAAAAAAAACATTTGT
TACTTTAATGTAAATACGCAGTTTTATACCATGTACCATAAAACAGGTTAGAAACCAGTT
TGTTGGAAGTGTAATATAAAATAACATATTGTGTTGTTAACTTAACAAAATACAAAGATA
AAGGTAAAAAAATAAAATAAAACCGCTCTCCCTGATAAATATTTTTGTGACCTTCGTTAA
GTAAAACGGTGTTAATATAATATTAAAATTATTATATATTAATTACTACAAGCAAAACGA
AAAGAAAGACTCAAATGGTTTAATTTTACAAATAATATTATTTTAACATTACAGTGCATA
GCTGTACATAAAACGGATCCATCGTTTATTTCTACAAAATGAACATTGAAGCATTTTATA
TAATATATTTAATAACAACTAAATATATCCTGACCTGAACGTTGTTCTCAAAGTCACAAA
AATATTTAACGAAATATAAATTAAAAAACAAAATACGAAAACAAGGCCGTAACAGTAAGT
AGCATTTCAAGTAGCATTTCTCTAAAAATAAAACACTCAGGAATAAAATAATACTGTGTA
CGTACGGATAGAAAAATACTAATTGAAACATTTAATATGCGACTTGTTTTAATATTGTAC
AGCATACATGGACGCGTTGTTTGCGTGACGAAATTGTATTATACAATGTTTAGCTGAGCA
TTTTTATTTGCAAATATAATTCCCTAGGTTGTTAGGGTACAATCAAATACTCCCGTGTAA
ACGTTAGCTAGCACTAAAACATTCGACGTTCGATTTTTTTTTTAATTCATGGATAGCGCG
CAATGTAACACAAAGCTGTCGTGCCGGGTAAACGAACTCAAACGAGACGGAGGCGGCTTG
CAAGTGACACTAAATACTTTCCGCGCGTCAAACATCTATTGTATCTAAAATCTGTTATAG
CAGTCGTACGGACAGACACGTTCTTAGATCTTAAATGTGACGAAATTAATGCGAATTAAC
TATTACTGTAATGTCTTGATTTGTTAATACTTAAAGTTTTTTTGCTCTTCCAAAAATGTA
TATAAAACATTTTATGTATTTACTTATCGTCTTATATGGGCAGACTGAGTGAACTAGATT
TTTTTCTGCCATTATAATGTCGTATAACAAACAGTACTTAGAGTAGACAAACAGTTTCCT
AGCTTACGTTTACGCAGCCTCCGCGCGTCTCAGCTAAACATCGTCCGTGCAAGCTCACGA
GGGTATCGAGTCGAACGTGTACTCTCTGTAATATGTGGGGTGGCCGTGTCTTACTCGTGT
GAGCGAACTTTCGGCGACCGTCGTCTCGTTGCCGCGCCGCCTCTGGTTGGCCAGCTTCTG
TTTGTTAACCGGCGAACCGATATAGCTGAGCATAACCGGCAGGAATACGAGTCCGTGGGC
CGCACCGAACAGCACAATCCCGAGGTACATCCGGAAGTAGAACACCTGGAAGATCTGGCT
CTTGGCCGTGGCGAGCACGATGATGCCGCCGAACTTGGTGAGCGTGATGCCGGACAGCAC
GGACGAGCCCATGCGCAGCAGCGCGTCCGCCGCGCGCTCCCCGCGCCCGCGCCCCGCCGA
CACGCTGAACGAGTGCACCAGGTGCGAGCAGAACTCCACCGATATGCCCACCGCCATCAC
CAAATTTACAAGCGAGACTGCATTCAAACTGATGCCCCACCAGTACATGAGGCCGCCGAG
ATTAACAACAATCATAGTGATGGTCACTACGACTACAAGAGCCGAGAAGAGATCGAAGCC
CATGAGCACGAAGGTGACGAAGAATATGGAGAGCACGGAGATGCCCATGCTCTTGAGGGT
GTCGGACCACATGGTGAGGTACTGCTCGTAGAAGACGTAGAAGACCGAGTAGGGGAAGAC
GTTGACGGTGGCGGAGTGTCCCAGGTCGCGGAGGTGCGCGTTGAGCGTCTCCGTGAGCGA
GCCCGCCAGCGCGCGCGCCGCCCGCAGGCTGCCGTAGTAGTCCGAGCTGCTGCGCAGGAC
CGTGTGGTAGCTCTGGTAGTAGGTGGCGCCGATCCCGGTGGTGTTCTGGCTGTGCGAGCG
CAGGTTGACGGCGTGCGAGTAGGCCGCGTGGCCTCCCTTGACGCAGCGGCTCGACGGGTT
GTCCTGCAGGAAGTACGGCAGGTACGTGCTGAAGTCCTGCGGGCTGGGACGCTCTTCCGG
CTGCACCAACTTTATGTTGCAAGCGGCACAATCGTCGGGTTGAGTGTCGCTGGGACAGAA
GCTGTTGTTGGACTGGAAGTAGAAGCAGCACTCCGGTGAGACAGACCAGTCGAAGAAGTC
GTCGAGCCAAGAGTTGGCTGGAGCCGCGATGTACGTGTCGGCCGGGCTGCGGGACGCAGC
GTATATCTGCATGGCGAGACTGTCGGGTCTACAGAACCTCGAGCCGCACAGCAAGTTCTG
CACGTCGGGGGTGGAGTAGTTCAGCTTGGCGTCCGTCTCGGCGTCCGTGAGCACAAAGTA
GACCGGCGGACCGATGTTCAGGTAGCGGTTCAGATGCTGGAAGTACTTCAACTGGAAACT
GTCGTGGGGCATAGACAGCTCTTGGTCTAGTCCGATGTCGATGTGAGGCGCTACAGCAAC
AGACGAGCAGAGCCAAGCAAAGAATATAATCATGACTGAGGCTCTGACTTCCCTCTTCAT
CAGGAAAGGTACATAGAAATGTTGAAACAGGTTGTACAATGCTCCTTCACCTTGTTCTGC
CAGGTCTGTTTTGGTGCCCCGCAGACAGCAGAATATATCGAACCTGTTGTCGAGTTGTCG
GCGCGTGTCCAGCGCCAGCAGCGCCACGAAGCAGGTGACCTGCAGCAGGAAGTCCACGAG
CAGCGCCACGGCGGCGTACAGCGCGAAGGCGCGCACGGCCGGCATGTCGCTCAGCGCCCC
CAGGAAGAAGCACACCGACTCCGACACCGACGTCACGAACATCGACGGGCCCACCTTGCC
GAGCATTCTACCGATGTGTTGCTCGACGGTCTCGTCGGGGCGGCGCGGCTCGCGCTGGTG
GGTCTGCACCAGGATGAAGATGTTGTCGACGCCGACGGCCAGCACCAGGAACGGGATGAC
CTCCACGATGATAAGCGTGGCCGCCACTCCATAGAACCCGAAGATGCCCATGGAGCACAC
CACAGACGCCAACACGATAACCACACCGCCGAGCCCGAGCGTGATCTTGCTGTCGATGAG
CAGCCGCGAGAAGGTGGTGAAGCGGCCGAGCGCGATGGCGATGTACGCGAACATGATGAA
GTAGGACACGAGGATGGTGTACACGTCCGACTTGGACTCGCGGTCCAGCTCGTCCTCGAT
GGAGCGCTCCGACGTGTACGCGATGTCCATGTAGCCCGGCATCGCCTTCTCCGTGTAGTT
CTTCATGAACGCAATGAACGTCTTCTCCCACTCCAGTGCTTGTTTCAGCTGGGACTTGTC
CTGCTTGTTGTTGACGAGAAAGGTGAGGATGAGTGCCTGCGCGCGGTGGTAGGGCGCGTG
GGCAGAGAGCTGGTCGCCGCGCGGCAGGAAGCCGCCCAGCGCCACGCCGGGCAGGACGGG
CCCGCCGTACGACGACAGGCAGTCCACCGAGATCGGGTTGCTGGAGCACTGCAGGATCTT
GTCCAGGTGTTCGTTGTCCTCGTAGGAGAACTCGGACTTGTCGTTCTGCCACCAGCCCCA
CACGCTCTGCAGCACGCAGTCCTTGCTGGTGACGGGGCCGCGGAAGGGCGACGACAGCGG
CGCGTAGCAAATGTTCTGGATCCCGGACTCGTTGCCGAGCTCTAAGATCTTGGACTGCAG
GTCGAACACGTCCAGCATGAAGGTGGCGTTGAACACAGGCCCGAAAGTCAGGTTCGCGTG
TTCGATCTCGGGCAGACCTTTCGAGCTGATTATTAACATTTCTGTCCTGTAGAAAGGTTC
GAAGTAGGAATCGAACCGCTGCCTCTCGACCCTGGAGCGCGAGGTGGGCGAGGCCCACAG
CTCCACGGGGTCGGTGGTCACCTGCATGTACGTGATGCCGGAGCCGAGGATCACCACAAC
GCACAAACCAGAGAAGAGGACCAGCCAAGGCGAGGAGGCCATGACGCAGCCCCACCACTG
GAAGAAGTCTTCAATTTTGGATTCCGTCGCAGCACCGAGCTTCTCGAGGAACGTCGCGTC
TGTCTCGTCGCCATCGGTGGCCTCCATGGTCCAGCGCGTGCCCGACGCGTTTGTTCCCAT
CTCTTGATTGTTGTCTGAAGACACACCGTGCGTATGCAGTAGGGGCGGGTACGTACTGGC
GCGGCGCTCGTGCAGCGGGCTCGTCTCGGGGCCGCACTCAACGAGGTTTTCGGTTTGATT
GCAACAGAAGACGCCCGTGAGGAACAGCGTCGAGAAGATACAGAATACGATGGTCATGAC
GATTGCGTAGCCGTCGAAGCCCGCGATGGAGAACGGCTGCGGGGGCGGGGGGCGCGGCGG
GGGCGCGGGGCACGACGCCTCGCAGTCCAGGCACGAGCAGCCCGGCATGCCCTTCGTTCC
GACATTGCAGGGCTCGGCTATCGGAGCGTAGGGCGTGTACCCATCGACGGGCACGTCAGT
GGCCTTATAGTTAATCTGGAAGGGCACTTGATAGTTGGAAGCGTCCCCCATGTTATCGAA
CCAACGTTGCGCCGAGCACGCGTCTCCCCACTGACCGCACATCACCTTTATGGATCGCTC
GTTTGTTGACGTAAGCTTAACCTCAGAGCATGAGTTGTAGATGCCATCCATGAAAGTTTT
ACTCAGGTAGTAATCGATCTCAGATATCCTGCGATGTGTACCGTTGAACTGTTCTGTTTG
AACTGGCTTCAAGTATTTGCTCTGATCGACGGCGCAGGCCATTCCACAGATCGGCTTCAA
AAAGTTCTGAAAGCACGTCGGGCATCTCCCCAGCAAATTTTCCGCAAGGGCGATATTCAC
TTTGAGCTGGTTCAGTTGTTCGTAATTGCAGCACGAATAACCTCCTTTGGCTATCTCGGG
ACAATATTGCTCAATTATTTTCATTGCCTTTTCTTCGATCGGTTTAGCGGGTCCATCATA
GAAACAATTCATCATTTTATGTTCTGTGCTGTTCGCACAAACGCCGTACCATATGCAGTG
ACCATCTTCGGCCAGAGCAGACGGGATATGTTCTACTAACACCAATAGAAAAAACAAGGC
AGATAGAAATCGTCGCAAAAAACTTCCGCGATCAGCCATCTTTTATCCTTATTTTTCACA
ATGAAATGATTAGATTCAATTTTATTAGCATATTATAATTAGAGCTTGTCCAAAAAATAC
GTTTCTCTAACGTGAGTTACGTAGAGTAAAAAATAAAATAACAAAAATCATAAATAAATT
ATTTGTCCGACATAACGCACCACTATCGCGCACAATTAGCTTCCCGAAAGCTCGAGATTT
G
(6061 bp)

- SilkBase 1999-2023 -